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0 votes
0 replies
181 views
News: Course: Handling Missing Data in R (Online, 22–24 April)
imputation missingdata r
written by Physalia-courses 281
0 votes
5 replies
840 views
Estimate transposable elements copies and proportions
star transposons salmon
updated by samuel.a.odonnell 86 • | written by pailloufat 0
0 votes
9 replies
1.1K views
Tool: Jetomics: A private, no-code desktop platform for RNA-Seq analysis
rna-seq software windows transcriptomics
updated by benformatics 426 • | written by Aram Donyaee 0
0 votes
1 reply
340 views
How to export high-resolution figures from QIIME2 visualizations for publication?
qiime2
updated by GenoMax 16K • | written by Pluton17 0
0 votes
5 replies
813 views
Denovo assembly oxford nanopore
nanopore assembly
updated by dr_cfoster 125 • | written by Anam Saleem 0
0 votes
5 replies
700 views
Batch correction of scRNA using Scanorama
tumor immune scrnaseq batch_correction
written by mrashad 9
0 votes
0 replies
197 views
How to deal with high LD in bacterial genomes for selection scans.
bacteria gxe genome
written by nitinra 5
1 vote
5 replies
1.4K views
Job: Database developer to University of Copenhagen
developer programming database bioinformatics python
written by info 9
0 votes
4 replies
792 views
How can I search for orthologs ?
blast hmmer ortholog
updated by dulankak 3 • | written by D 0
0 votes
1 reply
343 views
CPU-based prediction of multi-protein complexes
interactions prediction protein-complex protein-protein
updated by dthorbur 350 • | written by ja569116 0
0 votes
12 replies
1.7K views
Which correlation test better for small ordinal data
ordinal correlation data test
updated by kalavattam 85 • | written by MS 3
0 votes
2 replies
501 views
why my fastqc on trimmed data failed?
fastqc galaxy analyses ngs
updated by Ram 4.5K • | written by kamran.kouchakzadeh.kk 0
0 votes
4 replies
904 views
Forum: Courses on RNA-seq focussing on statistical analysis and design
rna-seq
written by microfuge 197
0 votes
1 reply
366 views
What's the best way to batch retrieve RefSeq accession numbers from a list of type strains?
refseq type strains genomes
updated by GenoMax 16K • | written by Mackenna 0
0 votes
1 reply
412 views
Preparing a bed file for showing gene structure(exon/intron) by GSDS from a list of gene ID
bed
updated by cmdcolin 448 • | written by HajiNasrollah 0
0 votes
0 replies
413 views
News: AI for Genomics course - online, 7–9 April
genomics machinelearning ai deeplearning
written by Physalia-courses 281
0 votes
3 replies
738 views
Significant Kallisto index size difference: v0.51.0 (550MB) vs v0.48.0 (2.6GB)
kallisto
updated by GenoMax 16K • | written by musfirajamil 0
0 votes
0 replies
313 views
Well-established methods to distinguish malignant vs normal epithelial cells in mouse scRNA-seq data (10x Chromium)
scrnaseq
written by andromeda.milky42 0
0 votes
4 replies
828 views
Should I treat different assemblies of a sample as different "haplotypes"?
hifi uncertainty assembly
updated by Istvan Albert 10K • | written by Panos 191
6 votes
15 replies
3.4K views
Tool: FastAlign: 3x Faster Sequence Alignment on Commercial CPUs with 100% BWA-MEM Compatibility
sequece alignment genome analysis
written by YeWen 18
0 votes
4 replies
870 views
Chip Seq Analysis of RNA Polymerase 2
chipseq
updated by theodore 14 • | written by Gaurav 0
0 votes
1 reply
368 views
.KO files on IMG don't have headers
ko kegg orthologies img
updated by Arup Ghosh 402 • | written by rlpeng 0
7 votes
7 replies
2.3K views
Tool: AliNe (Alignment in Nextflow)
nextflow alignment
updated by Istvan Albert 10K • | written by Juke34 949
0 votes
0 replies
260 views
News: Assembly and Annotation of Genomes course - online, 9-13 March
genomeassembly genomeannotation nanopore pacbio illumina
written by Physalia-courses 281
0 votes
6 replies
1.2K views
Detecting effects of DNA base modifications by NGS
nanopore pod5 bacteria promethion
written by zizigolu 438
0 votes
3 replies
965 views
No significant genes after FDR correction in microarray (n=3) – how to proceed with exploratory analysis?
microarray limma
updated by Ram 4.5K • | written by Samaksh 0
0 votes
3 replies
1.1K views
Recommended thresholds for filtering modkit pileup bedMethyl output (Nmod, fraction_modified, Nfail)
methylation modkit bedmethyl
updated by GenoMax 16K • | written by alexandrakortsi 0
1 vote
6 replies
11K views
How to make a summary plot like below?
cancer classes oncoplots
updated by selkamand 1 • | written by Jianlan 1
1 vote
1 reply
1.0K views
High log2 fold change but no significant adjusted p-values in DESeq2 (two conditions, three biological replicates each)
adjusted-p-values deseq2 rna-seq
updated by ATpoint 9.1K • | written by Chamara Lakshitha 3
0 votes
1 reply
1.1K views
Understand Bedtools coverage output
bedtools coverage
updated by kalavattam 85 • | written by ramshahaya 2
1 vote
0 replies
274 views
Variant Alelle Frequency graph interpretation
cnv vaf
updated by GenoMax 16K • | written by 715c719f 1
2 votes
1 reply
1.7K views
Tool: Modernized RNA-MuTect pipeline for tumor-only RNA-seq somatic variant calling
somatic rna-seq
updated by Charlotte Stubbe 0 • | written by darklings 60
0 votes
4 replies
834 views
U2OS cell line reference genome
reference alignment
written by anubratadas 2
0 votes
2 replies
693 views
What is the most commonly used .aln viewer?
alignment msa
updated by cmdcolin 448 • | written by yesquokkan 1
0 votes
2 replies
780 views
GATK resource bundle alternatives
hg38 gatk resource bundle
updated by GenoMax 16K • | written by stlba 0
0 votes
3 replies
2.6K views
How do you do differential splicing using edgeR command diffSpliceDGE?
differential-splicing diffsplicedge edger
updated by Gordon Smyth 916 • | written by Assa Yeroslaviz 197
0 votes
0 replies
324 views
Job: Postdoc Opportunities: Cancer Genomics for Regulatory RNA Therapeutics
postdoc
written by rory.johnson 2
0 votes
1 reply
419 views
PyMOL surface coloring problem in TCR-MHC contact visualization
tcrcontactresidue pymol tcr
updated by Mensur Dlakic 3.0K • | written by rachana 0
0 votes
0 replies
258 views
News: Course - Epigenomics Data Analysis (4th edition), online, 13–17 April
rnaseq atacseq epigenomics multiomics chipseq
written by Physalia-courses 281
0 votes
0 replies
402 views
Job: Postdoctoral Bioinformatician / Computational Biologist (m/f/d)
job posting
updated by colindaven 844 • | written by lalit.kaurani 0
0 votes
0 replies
727 views
News: EMBL-EBI Training course | Data science for life scientists: hands-on machine learning for biological data
bioinformatics data science
written by EMBL Events 2
0 votes
3 replies
729 views
adding features to gtf file using agat tool function (2026)
agat gtf
written by jon50250 1
0 votes
1 reply
507 views
vg index -j hangs for weeks (minigraph-cactus pangenome, dist file incomplete or missing distance information)
vg
updated by Xian 11 • | written by RianeZ 0
0 votes
1 reply
398 views
controls for chip-seq real time PCR of h4k16Ac (293 cells)
chip-seq
updated by ATpoint 9.1K • | written by adielb 0
0 votes
3 replies
837 views
Should I be concerned about warning in DESeq2?
deseq2
updated by swbarnes2 1.5K • | written by bioinfo 19
0 votes
2 replies
1.4K views
Differential Gene Expression Analysis with DESeq2: Is it correct to just get a subset of genes that is of interest and carry out DEG Analysis just for those genes?
rna-seq deseq2 differential_gene_expression
written by Savindu 0
1 vote
31 replies
4.8K views
Tool: [Tool] scVAE-Annotator: Automated Cell Type Annotation for scRNA-seq with VAE and Adaptive Marker Discovery
scrna-seq python machine-learning cell-type-annotation tool
written by or4k2l 2
1 vote
8 replies
3.8K views
adding features to gtf file using agat tool function
gtf
updated by GenoMax 16K • | written by 1769mkc 127
0 votes
2 replies
562 views
Cellchat rankNet information flow
cellchat single cell
written by Nir 0
0 votes
3 replies
758 views
Shape of PC loadings
pca rnaseq
written by 131bco 0
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