Hello, I am currently working with shotgun metagenomic sequencing data from the human gut microbiome, and I aim to construct a co-occurrence network. Below is …

I have imported my bam and index files into IGV and want to check the quality of my alignments for a particular gene to ensure …

Hi guys, I am looking for suggestions/recommendations from the research community regarding public databases that are most commonly used by researchers in their analysis. These …

I'm wondering what method used most commonly to generate high-quality genome track? (like the one showed below) I use IGV, but the resolution of the …

Hi, Someone in my lab recently got some PacBio sequencing done on a single amplicon. We're trying to figure out how to even look at …

Hi, Can anyone recommend tools that are specifically developed to identify splicing regulatory elements (SREs)? Would like to know what tool is commonly used for …

SAM format specification tells that `M` (alignment match) CIGAR operator can be used instead of the `=` (sequence match) and `X` (sequence mismatch) operators. Now …

<p>What is the most commonly used file format for storing Copy Number Variation data?</p>

<p>Hi,</p> <p>I am new to this field &amp; i need to identify SNPs. So i tried to align my seq to reference using <a href='http://bio-bwa.sourceforge.net/'>bwa</a> …

<p>Currently I am using IGV to visualize the GFF files that I am creating. However, screen grabs of the viewer don't translate well to presentation …