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questions
1
vote
1
reply
2.1k
views
Minfi probe filtering
minfi
R
p-value
updated 6 months ago by
eebloom
▴ 80 • written 6.4 years ago by
niutster
▴ 110
0
votes
1
reply
1.7k
views
Error in new version of minfi
minfi
software error
reading file
updated 4.0 years ago by
sabin
▴ 50 • written 6.9 years ago by
niutster
▴ 110
0
votes
3
replies
4.3k
views
converting gene symbol to gene ID in bioDBnet
Gene-Symbol
Entrez
updated 9 months ago by
Ram
43k • written 6.6 years ago by
niutster
▴ 110
0
votes
3
replies
1.7k
views
Illumina HM450 epigenetics
rna-seq
genome
updated 4.7 years ago by
Biostar
20 • written 8.0 years ago by
niutster
▴ 110
1
vote
5
replies
4.2k
views
How to import both node and edge files into cytoscape from WGCNA?
WGCNA
Cytoscape
node file
edge file
updated 5.2 years ago by
zhaoliang0302
▴ 50 • written 6.4 years ago by
niutster
▴ 110
2
votes
1
reply
1.4k
views
common genes between DMRs and DEGs
DMRs
DEGs
Genes
updated 5.8 years ago by
Pin.Bioinf
▴ 340 • written 6.2 years ago by
niutster
▴ 110
0
votes
1
reply
2.0k
views
How to merge probes with the same gene symbol in soft file?
microarray
soft file
gene symbol
updated 6.3 years ago by
mbens
▴ 100 • written 6.3 years ago by
niutster
▴ 110
19
votes
15
replies
9.6k
views
7 follow
How filter genes to construct co-expression network?
WGCNA
Co-expreesion network
DEG
Filtering
updated 2.5 years ago by
WouterDeCoster
47k • written 6.3 years ago by
niutster
▴ 110
0
votes
0
replies
999
views
Which differential corellation ranges is meaningful?
differential co-expression
corellation
6.3 years ago by
niutster
▴ 110
1
vote
2
replies
1.2k
views
similarity in methylation of two different persons
DMRs
methylation
biology
6.5 years ago by
niutster
▴ 110
0
votes
0
replies
1.1k
views
"ChAMP" package quality controls
R
packages
Quality control
ChAMP
6.5 years ago by
niutster
▴ 110
0
votes
1
reply
1.5k
views
probe's p.value in 450 k array
450k
methylation
p.value
updated 6.5 years ago by
andrew.j.skelton73
6.6k • written 6.5 years ago by
niutster
▴ 110
0
votes
1
reply
2.0k
views
Gene id in bioDBnet web site
Gene Symbol
Gene id
bioDBnet
updated 6.5 years ago by
Uma
• 0 • written 6.9 years ago by
niutster
▴ 110
1
vote
3
replies
1.7k
views
literature review by a web server
literature review
genes
disease
updated 6.5 years ago by
Denise CS
★ 5.2k • written 6.5 years ago by
niutster
▴ 110
0
votes
2
replies
1.4k
views
Validating methylation data
Validating
methylation
expression
6.6 years ago by
niutster
▴ 110
1
vote
1
reply
1.5k
views
Different results from Enrichr
Enrichr
GO
Pathway
6.6 years ago by
niutster
▴ 110
1
vote
2
replies
2.3k
views
KEGG Pathway Search Result Erro
software error
updated 6.7 years ago by
shania90.lk
▴ 30 • written 7.1 years ago by
niutster
▴ 110
0
votes
0
replies
1.2k
views
No significant differential methylated regions in control and eutopic samples comparison
differentially methylated regions
FDR
6.7 years ago by
niutster
▴ 110
3
votes
5
replies
1.5k
views
problems in data frame
data frame
scan command
R
updated 6.8 years ago by
Santosh Anand
5.7k • written 6.8 years ago by
niutster
▴ 110
3
votes
4
replies
1.5k
views
reading txt file
R
txt file
updated 6.8 years ago by
dariober
14k • written 6.8 years ago by
niutster
▴ 110
0
votes
1
reply
1.4k
views
Filtering DMRs
genome
updated 6.9 years ago by
Biostar
20 • written 7.0 years ago by
niutster
▴ 110
0
votes
11
replies
2.9k
views
Density plot parameters in minfi package
Density plot
minfi
density parameter
updated 6.9 years ago by
theobroma22
★ 1.2k • written 6.9 years ago by
niutster
▴ 110
2
votes
6
replies
2.0k
views
Length of differentially methylated regions
DMRs
genome
length
updated 6.9 years ago by
Devon Ryan
104k • written 6.9 years ago by
niutster
▴ 110
2
votes
5
replies
5.3k
views
minfi pre-processing and normalization
minfi
R
pre-processing
bead-count
normalization
updated 6.9 years ago by
andrew.j.skelton73
6.6k • written 6.9 years ago by
niutster
▴ 110
0
votes
4
replies
2.3k
views
minfi out of band probes
R
updated 6.9 years ago by
yura.grabovska
▴ 70 • written 7.5 years ago by
niutster
▴ 110
0
votes
1
reply
2.1k
views
Gene ontology clustering
Gene ontology
clustering
6.9 years ago by
niutster
▴ 110
4
votes
6
replies
3.3k
views
Gene set enrichment analysis tools
Gene-set-enrichment-analysis
bioconductor
updated 10 months ago by
Ram
43k • written 6.9 years ago by
niutster
▴ 110
0
votes
3
replies
1.1k
views
GREAT web server
GREAT web server
coding regins
non-coding regins
6.9 years ago by
niutster
▴ 110
13
votes
8
replies
3.1k
views
6 follow
Converting gene ids to each other
web-server
gene-id
updated 9 months ago by
Ram
43k • written 6.9 years ago by
niutster
▴ 110
1
vote
3
replies
1.2k
views
Identifying gene parts based on genomic regions
gene-part
genome
genomic-location
updated 10 months ago by
Ram
43k • written 7.0 years ago by
niutster
▴ 110
0
votes
0
replies
1.9k
views
Converting regions based on gene start , body , end site ,... to promoter ,exon, intron
gene sites
promoter
enhancer
exon
7.0 years ago by
niutster
▴ 110
1
vote
4
replies
1.3k
views
Subscription between genomic regions
genome
subscription
updated 10 months ago by
Ram
43k • written 7.0 years ago by
niutster
▴ 110
4
votes
6
replies
3.5k
views
Selecting between p.value, FDR, Bonferroni
statistical parameters
DMR
package
seqlm
updated 7.0 years ago by
agata88
▴ 870 • written 7.0 years ago by
niutster
▴ 110
0
votes
3
replies
2.6k
views
Probes of Human methylation 450 k
Human methylation 450k
probes
platform
7.0 years ago by
niutster
▴ 110
0
votes
0
replies
1.0k
views
Specified Sequence of a probe
Human Bead chip 450k array
Probes
Sequences
7.0 years ago by
niutster
▴ 110
1
vote
6
replies
2.8k
views
Gene Body methylation
genome
gene
updated 7.0 years ago by
EagleEye
7.5k • written 7.0 years ago by
niutster
▴ 110
0
votes
3
replies
2.7k
views
Threshold for Differentially Methylated Regions
genome
sequencing
updated 7.0 years ago by
Aerval
▴ 290 • written 7.0 years ago by
niutster
▴ 110
1
vote
1
reply
972
views
Effects of some especial non-coding regions
sequence
genome
updated 7.0 years ago by
GouthamAtla
12k • written 7.0 years ago by
niutster
▴ 110
0
votes
1
reply
2.1k
views
Error in running ReactomePA
R
7.0 years ago by
niutster
▴ 110
0
votes
0
replies
1.2k
views
seqlm installation error
R
software error
7.2 years ago by
niutster
▴ 110
1
vote
1
reply
1.2k
views
Functional Annotation for sequences
genome
updated 7.3 years ago by
Jean-Karim Heriche
27k • written 7.3 years ago by
niutster
▴ 110
1
vote
4
replies
1.2k
views
Transcriptome Data Base
gene
7.3 years ago by
niutster
▴ 110
0
votes
3
replies
1.4k
views
retrieve chromosome index
genome
sequence
updated 7.3 years ago by
Alex Reynolds
35k • written 7.3 years ago by
niutster
▴ 110
0
votes
0
replies
1.7k
views
minfi package, methylation data
R
7.4 years ago by
niutster
▴ 110
1
vote
2
replies
1.2k
views
Problem in finding chromosome index with UCSC
genome
updated 7.5 years ago by
GenoMax
142k • written 7.5 years ago by
niutster
▴ 110
0
votes
0
replies
1.5k
views
cutoff argument in bumphunter
R
7.5 years ago by
niutster
▴ 110
1
vote
3
replies
2.4k
views
Error in SVA package
R
7.5 years ago by
niutster
▴ 110
0
votes
2
replies
1.6k
views
Quality control, illumina 450 k, analysis
genome
7.5 years ago by
niutster
▴ 110
0
votes
2
replies
1.7k
views
minfi package, DMRs,
R
updated 7.5 years ago by
igor
13k • written 7.5 years ago by
niutster
▴ 110
1
vote
3
replies
3.6k
views
S4Vectors installation error
R
updated 7.5 years ago by
Biostar
20 • written 7.7 years ago by
niutster
▴ 110
54 results • Page
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