Functional Annotation for sequences

Question

[niutster]

Hi,

I have a file contains DNA sequences(for example chr12: 1234527: 12343764), I am interested to find which annotation can associate to each sequences, I need a web server to have complete annotation for each seq, for example, intron,exon,CpG island, promoter,... How can i find this information?

Answer 1

[Jean-Karim Heriche]

Use EnsEMBL if your species is represented there. If BioMart doesn't give you all you need, you can use the perl API.