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How to import both node and edge files into cytoscape from WGCNA?

Hi,

I am a little new with cytoscape, I used exportNetworkToCytoscape command in WGCNA to export the network, the commands output cotaining nodes and edges files but in cytoscape ,only one file can be imported. do anybody know how can i import both files into cytoscape?

wgcna cytoscape node file edge file
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updated by zhaoliang0302 • zhaoliang0302 • written by niutster niutster

Are you using desktop version of Cytoscape? If so is it MAC or windows?

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written by chetana • chetana

I use desktop version on windows.

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written by niutster niutster

Have you solved this problem? I just meet it and I don't know how to deal with it

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written by zhaoliang0302 • zhaoliang0302

Have you read the tutorial?; also, what have you actually tried?

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written by Kevin Blighe Kevin Blighe

1 answer

You should take a look at the tutorial written specifically for this by the WGCNA developers: Exporting a gene network to external visualization software

This question was also posted on Bioconductor, where one of the developers replied: WGCNA export to cytoscape.

Kevin

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written by Kevin Blighe Kevin Blighe

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