I am conducting a methylation analysis and attempting to identify Differentially Methylated Regions (DMRs). To achieve this, I've used the following code: ``` grs <- …

Hi, I am trying to run EPIC array data for methylation analysis using minfi package in R but my question is that after running bumphunter …

Hi, I am unable to extract differentially methylated regions(dmrs) after SWAN normalization in minfi for methylation array data. Below is the code used: MSet.swan <- …

Dear BioStar Users, I am using [minfi][1] to analyze the results of an EPIC array. To check differential methylation I decided to look for differentially …

Hi, I analysed methylation patterns of three samples with using "seqlm" package, one is control sample and two others are ectopic and eutopic samples in …

Hi, I am using "seqlm" package to find DMRs. Seqlm returns statistical parameters such as p.value, Bonferroni, FDR, ...for each segment (deferentially methylated region) .In …

Hi, I have a file contains some chromosomal indexes such that it has chromosome name, sequence start on chromosome , sequence end on chromosome. I …

Hi, I am using minfi to analysis idat files, in minfi introduction there is a function that retrieves the out of band probes but this …

Hi, I am using minfi quality control but there are several type such as: STAINING CONTROLS BISULFITE CONVERSION CONTROLS EXTENSION CONTROLS SPECIFICITY CONTROLS HYBRIDIZATION CONTROLS …

Hi all, I have a idat file contains three types of experiment: control, patient and suspected people, i want to find DMRs between patient and …