Hi,

I am trying to run EPIC array data for methylation analysis using minfi package in R but my question is that after running bumphunter to get differentially methylated regions (DMRs), I wanted to extract the list of significant genes associated with these DMRs. I know minfi package doesn't have the provision to do but is there any way to calculate the list of differentially methylated genes with p-values. Helping in this regard will be highly appreciated if anyone having similar issues or knowing the solution.

Thanks.