updated 15 days ago by
Ram
43k
•
written 15 days ago by
marco.barr
▴
130
1
vote
1
reply
167
views
1
vote
1
reply
138
views
updated 12 hours ago by
Nyksubuz
▴
20
•
written 1 day ago by
mirwa.zidi93
•
0
1
vote
0
replies
175
views
1
vote
4
replies
343
views
1
vote
14
replies
2.5k
views
updated 14 days ago by
GenoMax
142k
•
written 4.5 years ago by
Swimming bird
▴
20
1
vote
1
reply
213
views
1
vote
0
replies
194
views
1
vote
0
replies
142
views
1
vote
0
replies
96
views
1
vote
3
replies
334
views
23 days ago by
Art1ess
•
0
1
vote
2
replies
278
views
1
vote
6
replies
399
views
1
vote
3
replies
300
views
1
vote
3
replies
283
views
updated 6 days ago by
Ram
43k
•
written 7 days ago by
Omics data mining
▴
260
1
vote
4
replies
499
views
1
vote
1
reply
145
views
updated 2 days ago by
Ram
43k
•
written 3 days ago by
kilcdincer
▴
10
1
vote
2
replies
249
views
1
vote
3
replies
377
views
1
vote
3
replies
324
views
11 days ago by
Lada
▴
30
1
vote
4
replies
2.8k
views
updated 29 days ago by
Ram
43k
•
written 5.2 years ago by
grant.hovhannisyan
★
2.6k
1
vote
8
replies
543
views
16 days ago by
marco.barr
▴
130
1
vote
2
replies
280
views
22 days ago by
ahmad.sajad4541
•
0
1
vote
1
reply
174
views
1
vote
3
replies
324
views
1
vote
0
replies
177
views
1
vote
1
reply
452
views
1
vote
8
replies
3.5k
views
1
vote
0
replies
155
views
1
vote
2
replies
222
views
1
vote
3
replies
4.1k
views
1
vote
1
reply
524
views
1
vote
7
replies
536
views
8 days ago by
deepak
•
0
1
vote
1
reply
161
views
1
vote
0
replies
561
views
1
vote
1
reply
257
views
updated 16 days ago by
Ram
43k
•
written 17 days ago by
Jonathan Yoou
▴
60
1
vote
9
replies
393
views
updated 7 days ago by
i.sudbery
19k
•
written 10 days ago by
Assa Yeroslaviz
★
1.8k
1
vote
5
replies
156
views
1
vote
1
reply
454
views
updated 26 days ago by
Gordon Smyth
★
7.2k
•
written 29 days ago by
Chris
▴
280
1
vote
4
replies
2.4k
views
updated 29 days ago by
Ram
43k
•
written 4.9 years ago by
saksis.rihards
▴
10
1
vote
1
reply
184
views
updated 20 hours ago by
Jordan M Eizenga
▴
460
•
written 11 days ago by
sarumonsus
▴
10
1
vote
2
replies
288
views
15 days ago by
rianna.collins
•
0
0
votes
0
replies
211
views
29 days ago by
enferdeflame
•
0
0
votes
0
replies
165
views
updated 6 days ago by
Ram
43k
•
written 7 days ago by
naomiboldon
•
0
0
votes
0
replies
96
views
25 days ago by
kl
▴
10
0
votes
5
replies
274
views
0
votes
0
replies
162
views
0
votes
0
replies
225
views
0
votes
1
reply
205
views
0
votes
3
replies
1.8k
views
0
votes
9
replies
1.5k
views
Recent Votes
Recent Locations •
All
United States, 1 minute ago
Karachi, 2 minutes ago
United States, 3 minutes ago
Ithaca, 4 minutes ago
Brazil, 4 minutes ago
Hong Kong, 5 minutes ago
Spain, 8 minutes ago
Recent Awards •
All
Popular Question to
ashkan
▴
160
Popular Question to
Nyksubuz
▴
20
Popular Question to
Govardhan Anande
▴
150
Recent Replies
Comment: How to handle duplicated genes in TCGA data?
by
Zhenyu Zhang
★
1.2k
Second what is said above, ensembl_id is the unique identifier.
As a good bioinformatics habit, always use unique identifier for your anal…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
•
0
It doesn't work. The annotation labels are still in a default fontsize. I cant find a way to set the fontsize.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
Ram
43k
Yes. The solution to most things with ComplexHeatmap is to play around with parameters.
Comment: Reconstruction of locus, order contigs
by
BATMAN
•
0
I do not want to re-annotate the genome. I ask if there is a way to extract the region aligned with the mauve, in .gbk format.
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
hannes.bongartz
•
0
Thank you. What exactly do you mean? Changing `ha = rowAnnotation(text = anno_mark(at = mark_at, labels = gene_names_interesting_in_cluster…
Comment: ComplexHeatmap - How to change fontsize of rowAnnotation
by
Ram
43k
Try tweaking the `gp` of the rowAnnotation instead of tweaking the `annotation_name_gp` - that might do the trick.
Comment: Help! Reconstruction of locus, order contigs
by
dthorbur
★
2.0k
I don't understand your comment. What do you mean?
> my idea is not to have to write it down
If you have an alignment already, why can't…
Comment: Help! Reconstruction of locus, order contigs
by
GenoMax
142k
Please use `ADD REPLY/ADD COMMENT` when responding to existing content. `SUBMIT ANSWER` is for new answers to the original question.
Comment: Details on salmon index
by
Rob
6.6k
Hi Lorenzo,
That is correct. The initial version of salmon used the RapMap index explained above. When we published the selective align…
Comment: Help! Reconstruction of locus, order contigs
by
BATMAN
•
0
Thanks for your reply, my idea is not to have to write it down. What I have is an alignment of the .gbk from the progressiveMauve. It would…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★
2.9k
I did some digging aroumd, no static binary. Plus it seems you need to roll your own program.
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences?
by
Gabriel R.
★
2.9k
We tested it, however, it does not seem to produce a fast a file of the results or anything that we can easily parse. It produces a CIGAR a…
Comment: zero TPM for many gene including housekeeping when using kallisto
by
ashkan
▴
160
@atpoint yes but for example for the kallisto results I have expression for 2080 genes (transcripts) and the rest are 0 but in my STAR resu…
Comment: In one PCA plot, can I calculate the percentage of different factors that contri
by
marco.barr
▴
130
great team work! why can't you access and do the calculation for the other components too? can't you extract the information from the other…
Comment: zero TPM for many gene including housekeeping when using kallisto
by
ATpoint
82k
Yes, but this is what I am saying: GAPDH in human has at least 6 annotated transcripts. Have you looked at all of them? Maybe that particul…
Traffic: 2752 users visited in the last hour
Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by the
version 2.3.6
version 2.3.6