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797
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167
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143k
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109 follow
News: The Biostar Handbook. A bioinformatics e-book for beginners.
training handbook
updated 3 months ago by 2.8k • written 7.4 years ago by 100k
122
votes
44
replies
11k
views
24 follow
News: Help Make Biostar Better! Add Your Feedback, Opinions And Suggestions.
meta biostars
updated 6 months ago by 43k • written 11.5 years ago by 100k
24
votes
21
replies
7.6k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 11 months ago by 43k • written 5.6 years ago by ★ 3.4k
9
votes
3
replies
4.8k
views
News: Bioinformatics Contest 2020. Call for problems
contest
updated 11 months ago by 43k • written 4.7 years ago by ▴ 930
14
votes
3
replies
3.7k
views
News: Updated: Conference/Symposium/Seminar/Workshop alert 2018-2019
seminar symposium conference
updated 11 months ago by 43k • written 6.0 years ago by 5.8k
4
votes
3
replies
3.2k
views
News: -max_target_seqs 1 in NCBI standalone BLAST does not do what you think it does
blast
updated 11 months ago by 43k • written 5.6 years ago by 11k
2
votes
0
replies
3.0k
views
News: 2nd Edition of the Biostar Handbook. New online course starts now.
biostar-handbook
updated 11 months ago by 43k • written 5.3 years ago by 100k
4
votes
2
replies
3.0k
views
News: New ebook: From cell line to Command line to learn computational biology
unix snakemake computational-biology RNA-seq
5 months ago by Ming Tommy Tang ★ 3.9k
14
votes
11
replies
3.0k
views
6 follow
News: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated 12 months ago by 43k • written 6.4 years ago by ▴ 170
8
votes
8
replies
2.9k
views
News: Coronavirus Genome Analysis: a new volume in the Biostar Handbook
biostar-handbook education
updated 11 months ago by 43k • written 4.2 years ago by 100k
6
votes
1
reply
2.9k
views
News: "Oxford University Press to Publish NAR Genomics and Bioinformatics"
journal
updated 11 months ago by 43k • written 5.1 years ago by 161k
0
votes
0
replies
2.8k
views
News: course: Advanced R Programming. Berlin
R
updated 12 months ago by 43k • written 6.3 years ago by ★ 2.5k
0
votes
0
replies
2.8k
views
News: Workshops in Bioinformatics in 2019
assembly R RNA-Seq Python
updated 11 months ago by 43k • written 5.4 years ago by ★ 2.5k
13
votes
9
replies
2.7k
views
7 follow
News: Inviting NEW Biostars moderators to join Biostars slack channel
slack moderator
7 months ago by GenoMax 142k
2
votes
1
reply
2.6k
views
News: RNAseq data analysis with R/ Bioconductor - ONLINE COURSE
R RNA-Seq Bioconductor
updated 11 months ago by 43k • written 4.1 years ago by ★ 2.5k
9
votes
4
replies
2.5k
views
7 follow
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated 9 months ago by 43k • written 2.7 years ago by ★ 2.5k
0
votes
1
reply
2.4k
views
News: Hands-on training in Bioinformatics and Biomedical Data Science
NGS training
updated 11 months ago by 43k • written 5.6 years ago by ▴ 10
1
vote
2
replies
2.4k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics Metagenomics
updated 12 months ago by 43k • written 6.2 years ago by ★ 2.5k
1
vote
0
replies
2.3k
views
News: Multivariate analysis of ecological communities in R with the VEGAN package (VGNR01)
R
updated 12 months ago by 43k • written 6.1 years ago by ▴ 60
38
votes
7
replies
2.3k
views
News: 2 last seats available - 7th Berlin Summer School in NGS Data Analysis (September 4-8 in Berlin)
Transcriptomics DNA-Seq Variant-Calling RNA-Seq
9 months ago by David Langenberger 11k
0
votes
0
replies
2.3k
views
News: Fully funded PhD studentships in Quantitative Biology, Universite de Lausanne, Lausanne, Switzerland
snp R genome RNA-Seq
updated 11 months ago by 43k • written 5.6 years ago by • 0
3
votes
5
replies
2.3k
views
News: (18 August - "Enzyme Stability Prediction") A free webinar on on-going CAFA5 (Critical Assessment of Functional Annotation of proteins) challenge
gene-ontology CAFA protein
9 months ago by Alexander ▴ 220
6
votes
0
replies
2.3k
views
News: Bioinformatics internships with Google Summer of Code 2019
intern Ensembl GSOC
updated 11 months ago by 43k • written 5.2 years ago by 23k
0
votes
0
replies
2.3k
views
News: Workshop on Machine Learning for Transcriptomics Data
next-gen RNA-Seq
updated 11 months ago by 43k • written 6.0 years ago by ▴ 340
5
votes
0
replies
2.3k
views
News: [UPDATED] Hands-On NGS Data Analysis Workshops 2019
NGS Bisulfite-Seq RNA-Seq DNA-Seq
updated 11 months ago by 43k • written 5.5 years ago by 11k
6
votes
7
replies
2.3k
views
News: NCBI wants to remove quality scores from SRA
quality-scores trimming Assembly genome SRA
updated 11 months ago by 43k • written 3.9 years ago by ▴ 40
0
votes
0
replies
2.3k
views
News: INTRODUCTION TO PYTHON FOR BIOLOGISTS
RNA-Seq next-gen-sequencing
updated 12 months ago by 43k • written 6.3 years ago by ▴ 110
1
vote
0
replies
2.2k
views
News: UniProtKB FASTA headers: Addition of NCBI taxonomy identifier
swiss-prot uniprot taxonomy fasta
updated 12 months ago by 43k • written 6.4 years ago by ★ 2.4k
0
votes
0
replies
2.2k
views
News: Training in Bioinformatics for Beginners @ NIH, USA, April 17-20, 2018
beginners training
updated 12 months ago by 43k • written 6.2 years ago by ▴ 140
0
votes
0
replies
2.1k
views
News: Workshop: Metagenomics, Metatranscriptomics, and multi'omics for microbial community studies (9-13 April 2018 in Berlin)
Metatranscriptomics omics metagenomics
updated 12 months ago by 43k • written 6.2 years ago by ★ 2.5k
0
votes
0
replies
2.1k
views
News: Course. Analysis of single cell RNA-seq data.5-9 February 2018 Berlin (Germany)
next-gen RNA-Seq
updated 12 months ago by 43k • written 6.4 years ago by ★ 2.5k
6
votes
13
replies
2.1k
views
News: Ensembl reduced functionality: 10th March-16th April 2020
BLAT VEP Ensembl service
updated 11 months ago by 43k • written 4.2 years ago by ★ 2.4k
10
votes
0
replies
2.1k
views
News: Pan-Cancer Analysis of RNA Binding Proteins in ~7000 tumor samples
Pan-Cancer mutations TCGA RNA-seq cancer-driver
updated 12 months ago by 43k • written 6.3 years ago by ▴ 860
0
votes
2
replies
2.1k
views
News: RNA-Seq Data Analysis Workshop in Berlin, Germany (13 - 16 March 2018)
NGS RNA-Seq sequencing
updated 12 months ago by 43k • written 6.4 years ago by 11k
12
votes
4
replies
2.1k
views
News: #NGSchool2018 summer school in bioinformatics
NGSchool Personalised-Medicine Nanopore
updated 11 months ago by 43k • written 6.0 years ago by ▴ 290
1
vote
4
replies
2.0k
views
News: webserver of TCGA data www.tcgaportal.org
genome RNA-Seq TCGA gene
updated 11 months ago by 43k • written 6.0 years ago by ▴ 40
0
votes
0
replies
2.0k
views
News: Introduction to Machine Learning Workshop
Machine-Learning Big-Data Python
updated 11 months ago by 43k • written 5.4 years ago by ★ 2.5k
0
votes
0
replies
2.0k
views
News: Metagenomics course. 9-13 April 2018
genome R Metagenomics
updated 12 months ago by 43k • written 6.3 years ago by ★ 2.5k
0
votes
1
reply
2.0k
views
News: Course: Introduction to GWAS (BERLIN)
GWAS R Python Snakemake
updated 11 months ago by 43k • written 4.6 years ago by ★ 2.5k
0
votes
2
replies
2.0k
views
News: Illumina iSeq 100 sequencer
firefly illumina iSeq100
updated 12 months ago by 43k • written 6.4 years ago by 142k
3
votes
1
reply
2.0k
views
News: Precision Medicine Bioinformatics: From raw genome and transcriptome data to clinical interpretation (PMBI01)
next-gen assembly RNA-Seq gene
updated 12 months ago by 43k • written 6.3 years ago by ▴ 110
8
votes
4
replies
2.0k
views
News: supporting vg users on biostars
variation-graph genome vg vgteam
updated 11 months ago by 43k • written 4.7 years ago by ★ 2.4k
4
votes
0
replies
1.9k
views
News: Bioinformatics education: biology-inspired bioinformatics with project-based learning
education RNA-seq
updated 12 months ago by 43k • written 6.1 years ago by ▴ 340
0
votes
0
replies
1.9k
views
News: Training in Bioinformatics for Beginners @ NIH, USA, Sep 11-14,2018
training beginners
updated 11 months ago by 43k • written 5.8 years ago by ▴ 140
3
votes
0
replies
1.9k
views
News: Deep learning in GATK4
GATK4 deep-learning GATK
updated 12 months ago by 43k • written 6.4 years ago by ★ 1.2k
4
votes
4
replies
1.9k
views
News: 12th International Conference on Advancements in Bioinformatics and Drug Discovery
genome Computational-Biology
updated 12 months ago by 43k • written 6.0 years ago by ▴ 20
0
votes
0
replies
1.9k
views
News: Metabarcoding: Transforming the way in which biodiversity can be surveyed
next-gen-sequencing blast
updated 12 months ago by 43k • written 6.4 years ago by ★ 2.5k
4
votes
1
reply
1.9k
views
News: scRNA-seq data analysis Workshop in Berlin
RNA-Seq next-gen
updated 11 months ago by 43k • written 5.5 years ago by ★ 2.5k
3
votes
0
replies
1.9k
views
News: New web BLAST default parameters and search limits are now in place at NCBI
www-blast blast ncbi
updated 11 months ago by 43k • written 3.9 years ago by 142k
4
votes
1
reply
1.9k
views
News: Bioinformatics Contest 2018
contest
updated 12 months ago by 43k • written 6.4 years ago by ▴ 40
760 results • Page 1 of 16
Recent Votes
lncRNA and ncPEPs identification
Answer: Identifying common DEGs among multiple datasets
Answer: ggrepel function: geom_text_repel()
Comment: switch off warning in blast command line
Forward And Reverse Strand Conventions
Answer: Would you bother re-mapping RNA-seq data from an old GRCh38 build to a newer ver
Comment: Converting Degree Minutes (DM) to Decimal Degrees (DD) using python script
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Teacher to Rob 6.6k
Popular Question to Nyksubuz ▴ 10
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Recent Replies
Comment: Sam file Header problem by Pierre Lindenbaum 161k
https://gatk.broadinstitute.org/hc/en-us/articles/360035890671-Read-groups
Answer: Faster Needleman-Wunsch rapid global alignment of two sequences? by DGTool ▴ 20
I have also recently come across another global alignment algorithm that was recently released which could seem pretty interesting to test …
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by b.contreras.moreira ▴ 190
Not sure, you might ask in the repo, please share here the response if you find it
Answer: How to generate table_annovar from VCF input? by LucisTheFather • 0
Would you be more specific to your question? Do you mean how to debug this syntax error?
Comment: Blastn error : ncbi::CObject::ThrowNullPointerException() - Attempt to access NU by hophuquy0944 • 0
thank you
Comment: How to extract cells of different species after mapping with combined genome? by Tony • 0
I think this method should be applicable to all high-throughput single-cell RNA-seq platforms. Although the method of determining cell spec…
Comment: BiomartException: Query ERROR for existing dataset in BioMart by Nyksubuz ▴ 10
The dataset you want (taestivum_eg_gene) exists within the "plants_mart" schema, not the default schema. Your current code assumes the defa…
Comment: Add line under stat test by Nyksubuz ▴ 10
You could use [this][1] [1]: https://ggplot2.tidyverse.org/reference/geom_segment.html
Comment: API kegg - IndexError: list index out of range by Nyksubuz ▴ 10
It might be because the gene symbol is not found in the KEGG database. Add some extra error handling before parsing the results or do a man…
Comment: Sam file Header problem by saifulislam99121 • 0
Thank you for your reply. I am not very much sure about this RG. Can you explain me a bit?
Comment: GRIDSS: the Genomic Rearrangement IDentification Software Suite by dario.garvan ▴ 520
It seems that Alexandrov's [structural variant and copy number signatures][1] estimated by the [SigProfiler software ecosystem][2] aren't c…
Comment: Faster Needleman-Wunsch rapid global alignment of two sequences? by GenoMax 142k
Then you may want to see if a program like `lastz` ([**LINK**][1]) may be useful. [1]: https://github.com/lastz/lastz
Comment: Collect dispersed executable files and run them by using bingo. by Ram 43k
What is the purpose of this tool? I have `~/bin` in my $PATH and I soft-link all executables I need to that location so why install a new t…
Comment: Merge clusters in Seurat UMAP by bk11 ★ 2.4k
Can you try this? library(dplyr) seuratobj@meta.data <- seuratobj@meta.data %>% mutate(seurat_clusters = recode(seurat_clu…
Comment: Merge clusters in Seurat UMAP by kilcdincer ▴ 10
Thank you for the response but it does not change anything.
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