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vdauwera
vdauwera
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1,250
Joined:
14.3 years ago
Last seen:
4.0 years ago
Location:
Cambridge, MA
Twitter:
VdaGeraldine

Director of Outreach and Communications for the Data Sciences Platform at the Broad Institute in Cambridge, MA. I'm responsible for keeping the research community that uses DSP software happy and well-informed about our tools and how to use them. Our software products include GATK, Cromwell, and Terra.bio, and we are involved in the development of Picard and the WDL workflow language.

I wrote an O'Reilly book about GATK called Genomics in the Cloud (2/3 of which apply whether you use cloud or not): https://oreil.ly/genomics-cloud

Latest posts by user
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Answer: Answer: Help finding GTEx v8 Imputed Genotypes
written by vdauwera vdauwera
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Answer: Answer: Cloud Computing Services available?
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Comment: Comment: Long variant splits to several variants by variant callers
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Answer: Answer: GATK command for mutect2
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
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Comment: Comment: Why GATK4 doesn't carry out local realignment around indels ?
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Answer: Answer: Why GATK4 doesn't carry out local realignment around indels ?
written by vdauwera vdauwera
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Answer: Answer: ApplyBQSR won't recognise output argument
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Answer: Answer: Can anyone share me a good GATK4 workflow
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Comment: Comment: Strange speed up in GATK LeftAlignIndels
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
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Comment: Comment: Use of GenotypeGVCFs in population genetic studies
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Comment: Comment: GATK snap calling - combine exome and WGS?
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Comment: Comment: Genotyping low read depth sequences using GATK
written by vdauwera vdauwera
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Answer: Answer: Genotyping low read depth sequences using GATK
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Answer: Answer: GATK snap calling - combine exome and WGS?
written by vdauwera vdauwera
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Answer: Answer: Adding read groups to mark duplicated bam file
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Answer: Answer: GATK call arm level chromosome copy number variations (cnv)
written by vdauwera vdauwera
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Answer: Answer: GATK : VariantRecalibrator no positional argument is defined for this tool.
written by vdauwera vdauwera
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Comment: Comment: How to give multiple input files to the gatk ?
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