This is a test version of Biostars. For the public version, visit https://www.biostars.org.
News: webserver of TCGA data www.tcgaportal.org

Hi everyone,

I build a website for manipulating TCGA data.

www.tcgaportal.org

You can use this server to visualize survival data in different cancers and cancer subtype samples, You can check gene expression in cancer subtypes, in Pan-cancer and normal tissues. You can also check the correlation between gene expression (RNA-seq) and methylation; gene expression and mutation (for now only in Kidney KIRC; other cancer data will be uploaded later).

Enjoy :)

genome rna-seq tcga gene
• 2,794 views • link
updated by Ram Ram • written by xushutan • xushutan

Please provide descriptive information about the portal. What distinguishes it from other TCGA data portals that are already out there (cBioPortal, LinkedOmics).

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written by GenoMax GenoMax

Thanks. A brief description is added.

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written by xushutan • xushutan

LinkedOmics does a superset of the functionality offered here - almost all except pan cancer. What sets you apart? Disclaimer: I'm part of the LinkedOmics dev team.

• 1 views • link
written by Ram Ram

Nice to meet you here. Yes, there are many servers for TCGA data. I also use cBioportal and OncoLnc. And your website looks well estabilshed too. Hope my server can do some help for bioinformatiers. Also, if anyone find errors or has recommendation on analyzing TCGA data, please leave comments.

• 1 views • link
written by xushutan • xushutan

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