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chen
chen
Reputation:
2,530
Joined:
11.0 years ago
Last seen:
11 months ago
Location:
OpenGene

Libraries and tools for NGS data analysis and bioinformatics:

https://github.com/OpenGene

Latest posts by user
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Answer: Answer: Statistical analysis in a metagenomics study to validate biological differences
written by chen chen
1 vote
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Answer: Answer: Assembly issues
written by chen chen
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Answer: Answer: Trouble removing adapters from sequences using cutadapt
written by chen chen
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Answer: Answer: Fastp
written by chen chen
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1 reply
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Comment: Comment: fastplong: ultrafast preprocessing and quality control for long reads
written by chen chen
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1 reply
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Comment: Comment: fastplong: ultrafast preprocessing and quality control for long reads
written by chen chen
2 votes
12 replies
5.4K views
Tool: fastplong: ultrafast preprocessing and quality control for long reads
long-reads
updated by lieven.sterck lieven.sterck • written by chen chen
10 votes
1 reply
2.4K views
Tool: fastp 0.23.0 released, runs 2x faster, and generates reproducible outputs.
fastq
updated by GenoMax GenoMax • written by chen chen
9 votes
4 replies
4.1K views
News: fastp 0.22 released, with new FASTQ deduplication feature.
fastp
updated by Ram Ram • written by chen chen
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1 reply
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Answer: A: Repost: Quality of RNA Seq Data
written by chen chen
1 vote
1 reply
2.5K views
Tutorial: A very simple way to detect viruses and microorganisms from mNGS FASTQ data using fastv
sars-cov-2 fastv covid-19 viruses
updated by Ram Ram • written by chen chen
10 votes
1 reply
3.0K views
Tutorial: introduce a tool for fast identification of SARS-CoV-2 and other microbes from sequencing data
sars-cov-2 fastv covid-19
updated by Ram Ram • written by chen chen
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Comment: C: Do you need a deduplication tool for FASTQ data in fastp?
written by chen chen
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Comment: C: Do you need a deduplication tool for FASTQ data in fastp?
written by chen chen
6 votes
11 replies
10K views
Forum: Do you need a deduplication tool for FASTQ data in fastp?
deduplication fastp
updated by Ram Ram • written by chen chen
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Answer: A: Find illumina adaptors
written by chen chen
2 votes
0 replies
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Answer: A: How to blast a paired end fastq file?
written by chen chen
2 votes
0 replies
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Comment: C: help in Language
written by chen chen
0 votes
1 reply
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Comment: C: very confused with GC bias
written by chen chen
4 votes
1 reply
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Answer: A: help in Language
written by chen chen
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