i have a data produce from nextseq 500 and i want to find the adapters which used in my data, how do i find that adapter in https://support.illumina.com/downloads/illumina-adapter-sequences-document-1000000002694.html
Which kit was used? That decides which adapter you have to look for.
thats what i dont know, how should i found out which kit used on my data ? i just saw the NEXTseq500
That is the machine and does not tell you anything. Ask the people who made the data. Maybe one can make a best guess: What kind of data? RNA-seq, ChIP-seq? Try to run fastqc to check if there are adapter contaminations. fastqc recognizes most common adapters.
A: Identify adapter sequences for trimming from Illumina paired end fastq files
Normally they are Illumina TruSeq adapters.
If you don't know it, use fastp to detect the adapters automatically.
See https://github.com/OpenGene/fastp#adapters for details.
Remind to enable --detect_adapter_for_pe option if your nextseq 500 data is paired-end.
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