How to do the fastp analysis of multiple files instead of just one single file?
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nishimalhotra2612 •
The manual instructs you on how to run it in paired and mode.
To run on multiple files execute the program on each file manually or automate that in some fashion: for loops in bash, GNU parallel, makefiles etc
thanks for the suggestion i made a snakemake file for using it with multiple files
Hi, I wrote a script to do this, please take a look at: https://github.com/OpenGene/parallel
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Example (with a different program) to get you started: Trimmomatic job script to run on multiple pair end read file
thanks for the suggestion