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329 results • Page
3 of 7
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1
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0
replies
716
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Forum:
Open Project in Bioinformatics
genome
updated 11 months ago by
Ram
44k • written 3.7 years ago by
pradumnpc
▴ 10
0
votes
2
replies
1.2k
views
Forum:
Welcome to join our Wechat group for Bioinformatics!
single-cell
ChIP-Seq
genome
algorithm
RNA-Seq
updated 11 months ago by
Ram
44k • written 3.7 years ago by
Min Dai
▴ 160
12
votes
2
replies
3.0k
views
Forum:
List of genome annotation tools (>140)
gene
genome
updated 11 months ago by
Ram
44k • written 4.8 years ago by
Juke34
8.6k
13
votes
7
replies
1.4k
views
Forum:
Feedback for my python package to combine results from multiple classifiers
annotation
protein
python
machine-learning
updated 11 months ago by
Ram
44k • written 3.7 years ago by
fred.s.kremer
▴ 110
38
votes
17
replies
3.3k
views
7 follow
Forum:
Why does bioinformatics use a special format like a BAM file instead of a database like SQLite?
sam
bam
samtools
updated 11 months ago by
Ram
44k • written 3.8 years ago by
kojix2
▴ 250
60
votes
25
replies
5.9k
views
8 follow
Forum:
Am I crazy, or are most published RNA-seq studies vastly underpowered?
sample-size
statistical-power
RNA-Seq
updated 11 months ago by
Ram
44k • written 3.8 years ago by
telroyjatter
▴ 230
1
vote
1
reply
596
views
Forum:
Bioinfo and Microbio
snp
gene
genome
next-gen
updated 11 months ago by
Ram
44k • written 3.8 years ago by
priya.palvannan
• 0
23
votes
11
replies
2.1k
views
9 follow
Forum:
file and directory management best practices
file-management
updated 11 months ago by
Ram
44k • written 3.8 years ago by
nkinney06
▴ 140
1
vote
4
replies
1.8k
views
Forum:
What do you want to learn about bioinformatics?
course
education
updated 12 months ago by
Ram
44k • written 5.4 years ago by
AlexAbdulkaderKheirallah
▴ 120
2
votes
8
replies
1.7k
views
7 follow
Forum:
Which tools do you miss?
software
updated 11 months ago by
Ram
44k • written 3.8 years ago by
ete
▴ 110
3
votes
2
replies
1.2k
views
Forum:
Preferred cloud environment for genomics.
next-gen-sequencing
RNA-Seq
alignment
updated 11 months ago by
Ram
44k • written 3.8 years ago by
keremwai
▴ 10
1
vote
13
replies
2.8k
views
Forum:
Bioinformatics computer upgrade help
computer
updated 11 months ago by
Ram
44k • written 3.9 years ago by
truebeliever24
▴ 50
6
votes
5
replies
1.1k
views
Forum:
Russian universities for the study of biomedicine
russian-university
updated 11 months ago by
Ram
44k • written 3.9 years ago by
grigoryangeorg
▴ 30
22
votes
15
replies
9.0k
views
11 follow
Forum:
RNASeq user experience with Novogene?
RNA-Seq
updated 12 months ago by
Ram
44k • written 5.9 years ago by
ivanarg2
▴ 80
2
votes
9
replies
1.4k
views
Forum:
'No code' data manipulation tools for bioinformatics
software
updated 11 months ago by
Ram
44k • written 3.9 years ago by
andy
• 0
1
vote
2
replies
1.2k
views
Forum:
Metagenomics Tutoring Opportunity
metagenomics
microbial
tutoring
updated 12 months ago by
Ram
44k • written 5.4 years ago by
MK2000
▴ 30
23
votes
12
replies
2.0k
views
6 follow
Forum:
Whole-Exome Analysis on a Mainstream Desktop PC
NGS
whole-exome
updated 11 months ago by
Ram
44k • written 3.9 years ago by
David Langenberger
11k
2
votes
9
replies
1.4k
views
Forum:
Any good idea for bioinfo final presentation?
R
updated 11 months ago by
Ram
44k • written 4.0 years ago by
anran04100
• 0
5
votes
4
replies
1.2k
views
Forum:
Consider CodeOcean or other solutions for runnable Biostars answers?
CodeOcean
how-to
meta
updated 11 months ago by
Ram
44k • written 4.0 years ago by
Jeremy Leipzig
22k
0
votes
5
replies
1.1k
views
Forum:
Advice for a start in Bioinformatics
R
next-gen
Python
updated 11 months ago by
Ram
44k • written 4.0 years ago by
greesh.nk
• 0
23
votes
18
replies
1.5k
views
Forum:
Versioning of Blast DB and Reproducible Research
database
blast
reproducible-research
updated 11 months ago by
Ram
44k • written 4.0 years ago by
makrez
▴ 60
0
votes
0
replies
1.1k
views
Forum:
ssDNA Aptamer structure prediction
aptamer
selex
updated 11 months ago by
Ram
44k • written 4.0 years ago by
jnvabhigna123
• 0
0
votes
0
replies
794
views
Forum:
Where can I find a one-year fellowship in bioinformatics?
Bioinformatics-Minor
Postodoctoral-Fellowship
updated 11 months ago by
Ram
44k • written 4.0 years ago by
Ajjax
• 0
22
votes
8
replies
2.0k
views
10 follow
Forum:
Is there any online course for bioinformatics right now or in the next two or three months?
online-course
mooc
updated 11 months ago by
Ram
44k • written 4.1 years ago by
Eugenie
▴ 50
21
votes
18
replies
1.8k
views
Forum:
Is it safe to keep our data in github
github
updated 11 months ago by
Ram
44k • written 4.0 years ago by
rprog008
▴ 70
3
votes
6
replies
2.2k
views
Forum:
Choosing the appropriate test for differential analysis: Limma or Mann-Whitney (with BH correction)? Test for normality
R
Shapiro-Wilk
Limma
Mann-Whitney
updated 11 months ago by
Ram
44k • written 4.0 years ago by
innyus
▴ 40
1
vote
7
replies
1.6k
views
Forum:
Best online certificates / masters for Bioinformatics
learning
certification
courses
online-training
updated 11 months ago by
Ram
44k • written 4.0 years ago by
tenakha
• 0
34
votes
22
replies
3.0k
views
11 follow
Forum:
Have we failed as bioinformatician in this time of COVID-19
Bioinformatician
COVID-19
updated 11 months ago by
Ram
44k • written 4.0 years ago by
heididunst
▴ 10
0
votes
2
replies
1.4k
views
Forum:
Alternative of Ingenuity Pathway Analysis - QIAGEN to filter Biomarkers
RNA-Seq
updated 11 months ago by
Ram
44k • written 4.0 years ago by
bio
• 0
7
votes
8
replies
2.4k
views
Forum:
Virus Genome Length and GC Content of SARS-COV-2 causing COVID-19
sequence
genome
updated 11 months ago by
Ram
44k • written 4.2 years ago by
dulankak
▴ 30
1
vote
0
replies
591
views
Forum:
New to bioinformatics
R
Python
updated 11 months ago by
Ram
44k • written 4.0 years ago by
skusmle2013
▴ 10
30
votes
16
replies
2.3k
views
9 follow
Forum:
Which programming langauge shall I start as a beginner in Bioinformatics
programming-language
single-cell
updated 11 months ago by
Ram
44k • written 4.1 years ago by
nkg.bb
• 0
0
votes
1
reply
2.2k
views
Forum:
How's the bioinformatics engineering path? How to become a bioinformatics engineer?
machine-learning
Bioinformatics-engineer
updated 11 months ago by
Ram
44k • written 4.0 years ago by
SupBioInformatics
▴ 70
0
votes
2
replies
1.0k
views
Forum:
Suffix Arrays: looking for an instructive algorithm of SA construction for teaching
suffix-arrays
linear-time
teaching
algorithm
updated 11 months ago by
Ram
44k • written 4.0 years ago by
Michael
54k
0
votes
0
replies
748
views
Forum:
make sense out of Whole Exome Sequencing on cancer cell lines
next-gen-sequencing
Whole-Exome-Sequencing
SNP
updated 11 months ago by
Ram
44k • written 4.1 years ago by
Francesco
▴ 20
0
votes
2
replies
903
views
Forum:
1st-year grad student, plant biology lab, new to bioinformatics -- where to begin?
microarray
plant-biology
updated 11 months ago by
Ram
44k • written 4.1 years ago by
mkhoury
• 0
0
votes
0
replies
835
views
Forum:
Annotation for WGBS
next-gen
updated 11 months ago by
Ram
44k • written 4.1 years ago by
veronico
▴ 70
7
votes
9
replies
1.1k
views
Forum:
DEG analysis when not replicates are available
NOISeq
RNA-Seq
edgeR
updated 11 months ago by
Ram
44k • written 4.1 years ago by
Antonio R. Franco
★ 5.1k
5
votes
5
replies
949
views
Forum:
What will happen to data analysts after COVID-19 pandemic
COVID
updated 11 months ago by
Ram
44k • written 4.1 years ago by
zizigolu
★ 4.3k
2
votes
6
replies
1.2k
views
Forum:
Would love to hear from you re: which bionformatics resources could use an improvement in their interface.
seq
database
gene
prot
updated 11 months ago by
Ram
44k • written 4.1 years ago by
rtviii
• 0
10
votes
7
replies
2.0k
views
Forum:
Is trimming always better?
RNA-Seq
QC
trimmomatic
trimming
updated 11 months ago by
Ram
44k • written 4.9 years ago by
Mozart
▴ 330
2
votes
4
replies
1.3k
views
Forum:
Transitioning from Wet Lab to Computational Biology as a PhD Student/Surgeon
RNA-Seq
sequencing
updated 11 months ago by
Ram
44k • written 4.1 years ago by
ian.folkert
▴ 10
7
votes
5
replies
960
views
Forum:
scRNA rising in popularity, what comes next?
scRNA
updated 11 months ago by
Ram
44k • written 4.1 years ago by
Diedes
▴ 20
12
votes
12
replies
1.4k
views
7 follow
Forum:
Who qualify as a world class bioinformatician as seen in job ads
world-class
bioinformatician
qualification
updated 11 months ago by
Ram
44k • written 4.1 years ago by
scolobs
• 0
29
votes
18
replies
2.8k
views
12 follow
Forum:
what are the big questions in bioinformatics field nowadays
genome
updated 11 months ago by
Ram
44k • written 4.2 years ago by
t4192
▴ 20
6
votes
5
replies
1.1k
views
Forum:
A free temporary HPC service for bioinformatic analysis
HPC
updated 11 months ago by
Ram
44k • written 4.2 years ago by
wangdp123
▴ 340
5
votes
6
replies
1.1k
views
Forum:
COVID19 testing - can we/should we use NGS?
NGS
covid19
diagnostics
updated 11 months ago by
Ram
44k • written 4.2 years ago by
liorglic
★ 1.4k
6
votes
5
replies
7.8k
views
Forum:
Converting GFF to GTF
GTF
GFF
updated 11 months ago by
Ram
44k • written 4.2 years ago by
Juke34
8.6k
4
votes
5
replies
1.1k
views
Forum:
A silly question about journal clubs
journal-club
challenge
updated 11 months ago by
Ram
44k • written 4.2 years ago by
flogin
▴ 280
31
votes
41
replies
2.8k
views
12 follow
Forum:
Question regarding journal publications
publications
journals
updated 11 months ago by
Ram
44k • written 4.2 years ago by
K.Gee
▴ 40
329 results • Page
3 of 7
Recent Votes
GO analysis: Different results EnrichGO vs ShinyGO
Comment: NGS forensics: how to know if data is fabricated
T2T-CHM13 "complete" human genome gff/gtf annotation file
Answer: T2T-CHM13 "complete" human genome gff/gtf annotation file
Comment: Problem in getting geo file through GEOQUERY
Answer: Problem in getting geo file through GEOQUERY
Comment: SnpEff and Snpsift
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Comment: Functional enrichment analysis for unique gene IDs
by
Pegasus
▴ 100
Thanks for your answer, but as far as I know, gProfiler2 does not support bacteria. Could you please suggest alternative websites or softwa…
Comment: Create a new bed file with all pairwise combinations between two other bed files
by
J
▴ 10
Hi Alex, I'm sorry if I wasn't initially clear! The question hasn't changed; I had written in this post that I wanted all pairwise combinat…
Comment: BiomartException: Query ERROR for existing dataset in BioMart
by
Nyksubuz
▴ 20
Could share some examples for gene_ids?
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴ 120
yeah but i am unable to find the link of GPL6244.soft.gz
Comment: Problem in getting geo file through GEOQUERY
by
ATpoint
82k
> Can you send me ftp link so I can download that soft file manually? Please find this link on your own by browsing the respective GEO ent…
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴ 120
Thanks . I have downloaded all other files but just have problem in Error in downloadFile(myurl, destfile, mode = mode, quiet = TRUE)…
Answer: Problem in getting geo file through GEOQUERY
by
ATpoint
82k
Code runs for me and finishes in seconds. Maybe some poor internet connection on your end. Just set the timeout to 9999999 and retry. If th…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
ezz3
• 0
Thanks. I was wondering if that is the case but was having some issues understanding the transanno code which is written in rust and I don…
Answer: Multi-ploid data in ANGSD and NGSadmix
by
andersdetermig
▴ 20
1 ) I would not expect the haploid individuals to always cluster together but the model assumptions are violated. First of all the diploid…
Comment: transanno liftvcf "Error: length of chromosome [chr] is not equal to length in c
by
Pierre Lindenbaum
161k
"Are you using correct reference?" may be your reference is not using the same chrM. see https://www.biostars.org/p/199796/#199803
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
shpak.max
▴ 50
Could you please elaborate on what you mean by passing -L or -V, i.e. what would the appropriate argument be for -L with UnifiedGenotyper f…
Answer: Add stats to the plot
by
Ghada
• 0
It works. I have added this code my_comparisons=list(c("HRSV", "HRSV_RBV")) plot + stat_compare_means(method = "wilcox.test",…
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
LChart
3.9k
I believe UnifiedGenotyper is a locus walker that sets `emitEmptySites() = False`. As such you will not see entries for positions that have…
Comment: Problem in getting geo file through GEOQUERY
by
anasjamshed
▴ 120
Basically this is my code: if (!require("BiocManager", quietly = TRUE)) install.packages("BiocManager") # # pkgs <- rowna…
Comment: Fewer sites in vcf than in reference genome despite Emit_All_Sites argument
by
shpak.max
▴ 50
If that were the case, I would expect there not to be any uncalled sites in the vcf, yet there are a large number of sites with "." placeho…
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