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SupBioInformatics
SupBioInformatics
Reputation:
70
Joined:
6.3 years ago
Last seen:
5.6 years ago
Latest posts by user
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Comment: C: Can I still detect ambient RNA if I do not have filtered gene-barcode matrix?
written by SupBioInformatics • SupBioInformatics
0 votes
2 replies
2.5K views
Can I still detect ambient RNA if I do not have filtered gene-barcode matrix?
ambient rna soupx scrna-seq single-cell
updated by Friederike Friederike • written by SupBioInformatics • SupBioInformatics
2 votes
1 reply
2.5K views
How to QC single-cell RNAseq data for tumor samples if data is right skewed?
scrna qc distribution single-cell
written by SupBioInformatics • SupBioInformatics
1 vote
2 replies
4.8K views
How to use "SingleR" on the marker genes from `FindAllMarkers` for each cluster?
singler seurat scrnaseq scrna
updated by andynkili • andynkili • written by SupBioInformatics • SupBioInformatics
1 vote
1 reply
8.4K views
Should I normalize individually or after merging all the data?
scrna normalization seurat scale qc
updated by Picasa Picasa • written by SupBioInformatics • SupBioInformatics
0 votes
2 replies
0 views
Comment: C: What is the best practice of scRNA workflow for multiple patients and samples us
written by SupBioInformatics • SupBioInformatics
0 votes
1 reply
0 views
Comment: C: What is the best practice of scRNA workflow for multiple patients and samples us
written by SupBioInformatics • SupBioInformatics
2 votes
8 replies
9.1K views
What is the best practice of scRNA workflow for multiple patients and samples using Seurat
scrna sing-cell rna seurat integrate
updated by GiV17 • GiV17 • written by SupBioInformatics • SupBioInformatics
0 votes
0 replies
1.2K views
What are advantages to use globaltest, ORA and GSVA algorithms using different enrichment methods
rna-seq enrichment algorithm
written by SupBioInformatics • SupBioInformatics
0 votes
1 reply
36 views
How to calculate 'fold change' if the data is already normalized by log2
foldchange rna-seq log2
written by SupBioInformatics • SupBioInformatics
0 votes
1 reply
117 views
How to deal with two gene sets have exact same values from GSVA results?
rna-seq gsva gsea pathways
written by SupBioInformatics • SupBioInformatics
0 votes
0 replies
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Comment: C: How to extract all pathways and corresponding compounds/genes from Reactome data
written by SupBioInformatics • SupBioInformatics
0 votes
1 reply
0 views
Comment: C: How to extract all pathways and corresponding compounds/genes from Reactome data
written by SupBioInformatics • SupBioInformatics
0 votes
4 replies
110 views
How to extract all pathways and corresponding compounds/genes from Reactome database
pathways reactome r
written by SupBioInformatics • SupBioInformatics
0 votes
0 replies
0 views
Comment: C: How to calculate foldchange for log2'd expression data?
written by SupBioInformatics • SupBioInformatics
1 vote
2 replies
2.0K views
How to calculate foldchange for log2'd expression data?
fold-change t-test
updated by Ram Ram • written by SupBioInformatics • SupBioInformatics
0 votes
0 replies
0 views
Comment: C: How to perform enrichment (overrepresentation) using custom path sets in R
written by SupBioInformatics • SupBioInformatics
0 votes
2 replies
97 views
How to perform enrichment (overrepresentation) using custom path sets in R
enrichment pathway r metabolites
written by SupBioInformatics • SupBioInformatics
0 votes
0 replies
0 views
Comment: C: Salary insights for Bioinformatics Data Analyst at clinical research lab in Bost
written by SupBioInformatics • SupBioInformatics
0 votes
0 replies
0 views
Comment: C: Salary insights for Bioinformatics Data Analyst at clinical research lab in Bost
written by SupBioInformatics • SupBioInformatics
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