Hi,

I tried to use SingleR to identify cell types for clusters. I have the table of results from FindAllMakers of Seurat package.

I know that I can use:

SingleR(GetAssayData(seurat.object, 
        assay = assay, slot = "data"), clusters = Idents(seurat.object),
        ref = hpca.se, labels = hpca.se$label.main)

But is there any way I can utilize the markers for each cluster to define cell types using SingleR ?

Thank you for help.