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How to extract all pathways and corresponding compounds/genes from Reactome database

Hi,

How to download all pathways (hsa) from Reactome database and most importantly, the genes/compounds corresponded in pathways? I am actually interested in compounds, but if you know how to get genes, that' s helpful as well.

Really appreciate! Thanks in advance.

pathways reactome r
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written by SupBioInformatics • SupBioInformatics

There's also the bioconductor library reactome.db that has the database and a few handy functions.

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written by rpolicastro rpolicastro

Hi genomax, Thanks for answering! I have checked the download page. I only found Reactome Pathways Gene Set or just pathways. Do you which file is associated with compounds?

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written by SupBioInformatics • SupBioInformatics

Maybe Human complexes with their participating protein molecules this one?

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written by SupBioInformatics • SupBioInformatics

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