Get pathways containing input genes; Reactome Database
Hi,
I have a gene list. I want to download all the pathways that the genes are involved in from the Reactome Database. Is there a way to do it programmatically?
Thanks
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Marco Pannone •
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kamalika •
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kamalika •
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Over-representation analysis (ORA) in WebGestalt is the most straightforward way I could think of, and you do not even need any coding.
Choose "pathway" as functional database and then "Reactome", copy and paste your list of genes (specifying which gene ID you are using), and you are good to go.
For any extra info or parameter you want to adjust, look into their user guide.