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Ashutosh Pandey
Ashutosh Pandey
Role:
Moderator
Reputation:
12,340
Joined:
14.3 years ago
Last seen:
1.8 years ago
Location:
Philadelphia
Google Scholar:
Kl0E4EsAAAAJ

I am a computational biologist at GlaxoSmithKline. My research interest focuses on using high-throughput genetic and genomic data to study the impact of genomic variation on gene expression and phenotypes.

Research Interests:

Computational Genomics
Next generation sequencing
Complex trait analysis
Information retrieval 

Latest posts by user
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Answer: Answer: Using TCGABioLinks to query multiple cancer studies
updated by GenoMax GenoMax • written by Ashutosh Pandey Ashutosh Pandey
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Comment: C: MS/PhD Position: Computational Systems Biology, The University of Memphis
written by Ashutosh Pandey Ashutosh Pandey
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Comment: C: sequence in different line
written by Ashutosh Pandey Ashutosh Pandey
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Job: Host-Microbe Bioinformatics Post-Doctoral Fellow GlaxoSmithKline, Collegeville, Pennsylvania
microbiome postdoc
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Job: Computational Biologist, GlaxoSmithKline - King of Prussia, PA
computational-biologist
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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2.8K views
Job: Computational Biology Data Manager, GlaxoSmithKline - King of Prussia, PA
data-manager computational-biologist
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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1 reply
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Comment: C: Log transformation of RPKM data for PCA analysis
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Comment: C: Using phastCons30way in UCSC table browser
written by Ashutosh Pandey Ashutosh Pandey
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Answer: C: BWA and mapping
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Answer: C: Replace vcf in-house variant IDs with dnSNP variant IDs
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Comment: C: Conservation score for selected species
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Comment: Comment: Genotype (DNA-Seq) - Phenotype (RNA-Seq) database
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Comment: Comment: bwa error: paired reads have different names
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Comment: Comment: Gene annotation project leader at Ensembl
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Comment: Comment: Extract nucleotide from read at SNP position
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Comment: C: Remove sequences below median or 75%-tile length in fasta files
written by Ashutosh Pandey Ashutosh Pandey
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Comment: Comment: How to separate htseq-count table to coding RNAs and non-coding RNAs
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Comment: C: GATK on RNASeq/ChIP data - distinction between no SNP and no data.
written by Ashutosh Pandey Ashutosh Pandey
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Comment: Comment: How can I find a SNP related promoter, enhancer, TFBS and Gene ?
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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Comment: Comment: How to separate htseq-count table to coding RNAs and non-coding RNAs
updated by Ram Ram • written by Ashutosh Pandey Ashutosh Pandey
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