I have certain RNA Binding Protein sites that I have predicted computationally and they are said to be conserved in previous literature. I want to know if there is any track/tool that gives the conservation score or flags the conserved sequence in the specific species (or just mammals).
The UCSC Genome Browser carries various conservation tracks. You can manually score your sites against them with BEDOPS, e.g.: A: Average PhastCon score for a bed file
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Alex Reynolds
Thanks again , I will use the bedops code to calculate avg phastcon score using this track.
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The two resources I can think of now:
This is very useful information, thanks!
For GERP score is -0.5334 a somewhat conserved element?