This is a test version of Biostars. For the public version, visit https://www.biostars.org.
2 votes
0 replies
87 views
Tool: GO3, a Rust-powered Python library for Gene Ontology semantic similarity
bioinformatics rust python semantic go
written by Jose 2
0 votes
0 replies
124 views
News: (Workshop) - AI-Assisted Coding for Bioinformatics with Python – online, 1–2 July
python ai programming
written by Physalia-courses 281
0 votes
0 replies
88 views
Tool: Free-text to HPO mapping with multilingual input support
variant bioinformatics hpo interpretation
updated by GenoMax 16K • | written by sameer 4
5 votes
4 replies
429 views
Tool: Run edgeR, limma, and clusterProfiler from Python - pandas in, pandas out
python enrichment edger limma deseq2
updated by Gordon Smyth 916 • | written by John 5
0 votes
3 replies
340 views
sample size for pangenome project
size pangenome sample
written by Thuong 0
0 votes
5 replies
395 views
Tool: Giving Bulk-RNA Seq Analysis Tool (QC, Deseq2, GSEA, Cell Lines, etc) for free so the lovely community can test it
rna-seq rna bioinformatics bulk-rna
updated by kalavattam 85 • | written by Abdullah - NotchBio 3
2 votes
5 replies
394 views
Tool: I built BioMark — like Geekbench but for bioinformatics. Tells you honestly if your laptop can run BWA-MEM2, STAR, Cell Ranger and more. No tools needed.
bioinformatics python hardware wes benchmark
updated by Istvan Albert 10K • | written by shahbazigenomics 2
0 votes
2 replies
211 views
How do I consider that my reads might map to the 3' UTR (3'-tag RNA seq)?
rna-seq
updated by Ram 4.5K • | written by applepeanut 0
0 votes
2 replies
231 views
Best practices for cross-species differential expression analysis
microarray rna cross-species deg
updated by Ram 4.5K • | written by fnepo 4
0 votes
3 replies
294 views
Forum: Contribute and learn in open source projects
open-source
updated by jared.andrews07 1.9K • | written by Andy 0
0 votes
1 reply
189 views
using igv-reports for large dataset
vcf wgs igv
updated by Arup Ghosh 402 • | written by question_log 0
0 votes
5 replies
397 views
A genome impossible to be assembled
assembling genomics yeast genome
updated by colindaven 844 • | written by dafunny99 0
0 votes
0 replies
212 views
Job: Postdoctoral Researcher (AI & Genomics)
microbiome genomics machinelearning single-cell
written by mtabaka 3
0 votes
2 replies
191 views
Single-cell Proteomics
sc proteomics
updated by kalavattam 85 • | written by iibrams07 1
0 votes
1 reply
213 views
what Trimmomatic parameters would you recommend for RNA-seq data ?
alternative trimmomatic splicing rna-seq
updated by kalavattam 85 • | written by mahsa80.mm 0
0 votes
2 replies
1.3K views
RNA-seq raw counts normalization for survival analysis
survival tcga rna-seq r
updated by ATpoint 9.1K • | written by fifty_fifty 10
1 vote
2 replies
2.5K views
Import Pubchem Compound Sdfs Into Oracle?
updated by allice12jame.s 0 • | written by jocsch 1
0 votes
0 replies
160 views
Tool: Allelix – opens source offline variant annotation against 7 public databases (ClinVar, gnomAD, PharmGKB, GWAS Catalog, SNPedia, AlphaMissense, CADD)
python pharmacogenomics clinvar vcf annotation
written by dial481 0
2 votes
5 replies
361 views
RNA-seq with multiple treatment groups: Do I need additional correction across contrasts?
experimental multiple testing statistics design rna-seq
written by Netanel 3
0 votes
3 replies
303 views
Fast QC per base sequence problem
fastqc
written by Duy 0
1 vote
0 replies
198 views
Tool: Pipette.bio - a conversational AI agent that runs real bioinformatics analyses
biology bioinformatics computational llm agent
written by chirag 1
0 votes
4 replies
375 views
Blog: How I caught a problematic RNA-seq sample before it ruined my differential expression analysis
rna-seq rna pca qc
updated by Ram 4.5K • | written by Abdullah - NotchBio 3
0 votes
0 replies
105 views
News: Online course: Big Data Phylogeny and Comparative Methods
bigdataphylogeny comparativegenomics r
written by Physalia-courses 281
0 votes
2 replies
197 views
Is this library suitable for sequencing?
library ngs rna-seq
updated by GenoMax 16K • | written by Poshan 0
0 votes
1 reply
120 views
How are novel Snippy-derived mutations typically handled in bacterial WGS studies without wet-lab validation?
microbial-genomics snippy mutation
updated by Arup Ghosh 402 • | written by lavslipoprotein2204 0
0 votes
2 replies
190 views
Tool: A new pilot project for genomics analysis — AriaDNA
fasta viewer sequences visualization
written by davidmaimoun 6
10 votes
12 replies
4.5K views
Tool: Announcing bioSyntax: Syntax highlighting for biological files
computational-biology
updated by GenoMax 16K • | written by anicet.ebou 17
0 votes
1 reply
128 views
single RNA integration
snrna 10x smartseq2 scrna
updated by ATpoint 9.1K • | written by mrashad 9
0 votes
0 replies
99 views
Covariate shift in gene expression datasets
expression bioinformatics gene
written by Hargunjeet 0
0 votes
0 replies
95 views
Tool: Tool to recover missing / inconsistent NCBI metadata - feedback welcome
metadata curation ncbi
written by Vy 0
0 votes
2 replies
182 views
Need immediate help with Docking
autodock bioinformatics project docking
updated by chirag 1 • | written by Shreyashi 0
0 votes
1 reply
142 views
Forum: Need suggestion / roadmaps for bio informatics as a Computer science student
roadmap tutorial advice help
updated by GenoMax 16K • | written by Anuj 0
0 votes
0 replies
166 views
Tutorial: ABodyBuilder2 on macOS: OMP Error #15 libomp.dylib already initialized (Abort trap: 6)
abodybuilder macos immunebuilder conda
updated by Arup Ghosh 402 • | written by parthivrajesh 0
0 votes
2 replies
210 views
Reproducing a published rice salt-stress RNA-seq analysis from FASTQ: feedback on workflow choices?
agent ai rnaseq fastq
written by chirag 1
0 votes
1 reply
150 views
Purchasing Biostars Handbook
handbook biostars
updated by GenoMax 16K • | written by Anis 3
0 votes
0 replies
63 views
News: Workshop in Berlin- Agent-based and Individual-based modelling using NetLogo - 24-28 August
netlogo ibm abm
written by Physalia-courses 281
0 votes
2 replies
306 views
Best strategy for WGCNA with small sample numbers across multiple conditions
network wgcna
updated by pixie@bioinfo 150 • | written by María José 1
0 votes
0 replies
116 views
Global vs per layer normalization and scaling in Seurat workflow
seurat data normalisation integration singlecell
written by luca8650 0
0 votes
0 replies
97 views
News: Writing a grant or preparing a manuscript? Make sure your biological story is backed by strong evidence and clear visualizations.
discovery omics publication grantwriting pathways
written by Nicole 12
0 votes
2 replies
214 views
Biological replicates: individual samples or pooled samples for small RNA-seq?
mirna-seq pooling
updated by GenoMax 16K • | written by Cristina Zamora 0
1 vote
4 replies
643 views
Forum: Building an open-source LIMS project to better understand lab and bioinformatics workflows
software python lims
written by Eduardo 1
0 votes
0 replies
75 views
How to place telomeric unassigned contigs (acrocentric p‑arms) back onto chromosomes in a Verkko assembly
genome-assembly t2t verkko telomeres scaffolding
written by andrea 0
0 votes
9 replies
4.7K views
FeatureCounts: Low assigned reads, can I proceed? Do I need to do another pre-processing step?
featurecounts lowassignedreads star
updated by ATpoint 9.1K • | written by beginner123 0
0 votes
2 replies
259 views
Forum: How do you disclose LLM/agent use in code and documentation?
ethics authorship agent attribution llm
updated by jared.andrews07 1.9K • | written by kalavattam 85
0 votes
3 replies
1.5K views
Tool to merge two GTFs
r gtf
updated by Abdullah - NotchBio 3 • | written by manninm 0
0 votes
13 replies
881 views
Noise vs signal in RNA-seq.
atg star coverage rna-seq
updated by Aditya 0 • | written by Shakunthala Natarajan 2
1 vote
8 replies
610 views
Forum: Transitioning from bioinformatics to data engineering - advice needed
career transition entrylevel
updated by Abdullah - NotchBio 3 • | written by eyaggelia146 3
1 vote
3 replies
445 views
Wet lab to computational biology transition
career
updated by Abdullah - NotchBio 3 • | written by Curious cactus 1
1 vote
0 replies
136 views
News: AI bioinformatics
vibecoding aiagents dataanalysis genomics ai
written by Physalia-courses 281
0 votes
1 reply
3.5K views
News: Travel and accommodation bursaries for workshops on Gene expression analysis, Metabolomics, RAD analysis or Population genomics in Environmental ‘Omics
workshop
updated by theislandcollective 0 • | written by Daniel 397
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