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mahsa80.mm
mahsa80.mm
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2 months ago
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Latest posts by user
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3 replies
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Salmon mapping rate ~50-60% despite 93% STAR unique mapping (decoy-aware index, rRNA-depleted total RNA)
rna-seq transcriptomics salmon alternative splicing
updated by rfran010 174 • | written by mahsa80.mm 0
0 votes
1 reply
213 views
what Trimmomatic parameters would you recommend for RNA-seq data ?
alternative trimmomatic splicing rna-seq
updated by kalavattam 85 • | written by mahsa80.mm 0
0 votes
0 replies
95 views
What is the best approach/workflow to map rMATS alternative splicing events to full-length isoforms?
rmats alternative splicing isoform rna-seq
written by mahsa80.mm 0
0 votes
1 reply
611 views
Impact of polyA trimming strategies on paired-end RNA-seq data for alternative splicing analysis
alternative splicing polya trimmomatic rna-seq
updated by i.sudbery 2.3K • | written by mahsa80.mm 0
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0 replies
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Comment: Comment: polyA imapct on downstrem alaysis particularly alternative splicing
written by mahsa80.mm 0
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2 replies
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Comment: Comment: polyA imapct on downstrem alaysis particularly alternative splicing
written by mahsa80.mm 0
0 votes
2 replies
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Comment: Comment: polyA imapct on downstrem alaysis particularly alternative splicing
written by mahsa80.mm 0
0 votes
6 replies
916 views
polyA imapct on downstrem alaysis particularly alternative splicing
adapter alternative-splicing polya trimmomatic rna-seq
updated by Ram 4.5K • | written by mahsa80.mm 0
0 votes
2 replies
581 views
Question Regarding Adapter Detection with fastp and Trimming with Trimmomatic
rna-se adapter fastp trimmomatic
updated by Arup Ghosh 402 • | written by mahsa80.mm 0
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