This is a test version of Biostars. For the public version, visit https://www.biostars.org.
0 votes
2 replies
1.0K views
Cytoscape Node Size Mapping
cytoscape
written by William 2
0 votes
2 replies
898 views
Deeptools: Custom gcbias plots in R possible?
computegcbias deeptools
written by RJDan 0
0 votes
3 replies
1.8K views
HOMER Motif Analysis-- homer2 error
rna-seq homer
updated by ATpoint 9.1K • | written by HypoGG 0
4 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, April 21, 2025
herald
written by Biostar 380
0 votes
4 replies
1.5K views
Forum: ELISA‑Focused Lab Management & Analysis App – Would You Use It?
biotech startup
updated by Ram 4.5K • | written by Novoo 1
0 votes
0 replies
1.3K views
Job: Research Fellow in Cancer Evolution (Deadline 30 Apr 2025)
cancer-phylogenetics chromosomal-instability
updated by Ram 4.5K • | written by Bingxin 0
1 vote
10 replies
3.1K views
Proper preprocessing for ML after limma, quantile normalization and log2 transformation: Is standardization still necessary?
featureselection microarray preprocessing
updated by Mensur Dlakic 3.0K • | written by Sib 8
0 votes
0 replies
727 views
How to get gene count and transcript count from Stringtie
stringtie
updated by GenoMax 16K • | written by Abieskawa 2
0 votes
1 reply
1.2K views
Any recommendation for calculating Fu and Li's D using RStudio?
popgenome
updated by Michael Dondrup 5.6K • | written by Chatchapon 0
0 votes
4 replies
1.6K views
Running out of disc space with wsl2
memory wsl2 capacity disc
updated by Mensur Dlakic 3.0K • | written by vladimir_vinarsky 0
0 votes
2 replies
1.2K views
Filtering vcf file for variants - including non-selected variants
bedtools calling variant bcftools
written by andrebolerbarros 0
0 votes
4 replies
1.7K views
UCSC's NCBI RefSeq Track tables: header differences
ucsc-genome-browswer refseq ncbi
written by Synanth 0
0 votes
0 replies
799 views
sequenced noise elimination in searching for snp
snp sequencing virus
written by gagi1993 0
0 votes
1 reply
910 views
Issue with Agilent 2100 BioAnalyzer HS DNA Assay Trace
library-preparation dna bioanalyzer
updated by GenoMax 16K • | written by Beatrice 0
0 votes
2 replies
1.7K views
QIAseq 16S/ITS Screening Panel Primers?
16s primers metagenomics its
updated by GenoMax 16K • | written by Isaac 0
0 votes
2 replies
2.1K views
Analysing gene CNV from TCGA using TCGAbiolinks
tcga
written by Matt 0
0 votes
3 replies
1.4K views
How to use LOEUF plugin in VEP?
loeuf vep
updated by GenoMax 16K • | written by Sd 0
0 votes
0 replies
1.5K views
Trouble with CIBERSORTx: All P-values > 0.05, Low Correlation, High RMSE – What Could Be Going Wrong?
r cibersortx cibersort script
updated by GenoMax 16K • | written by Pumla 0
0 votes
1 reply
990 views
How can I identify genes with the MSTRG notation?
r stringtie rna-seq
updated by GenoMax 16K • | written by pinheirofabiano 14
0 votes
0 replies
2.3K views
dittoHeapmap didn't work in my data set(error code :Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds)
dittoseq scrnaseq
updated by ATpoint 9.1K • | written by kayah 2
0 votes
3 replies
1.4K views
Visualise duplications and inversions
inversions duplications
updated by cmdcolin 448 • | written by priya.bmg 7
0 votes
3 replies
1.3K views
Exon-level counts via featureCounts
diffsplicedge exon rnaseq featurecounts edger
updated by rfran010 174 • | written by n_navy 1
0 votes
5 replies
1.7K views
Picard : Bait_interval and Target_interval
picard bed read-depth coverage
updated by Ram 4.5K • | written by AIMAR 7
0 votes
2 replies
1.3K views
Does vg giraffe output secondary and supplimentary alignments?
vg giraffe
written by lushjia 0
0 votes
0 replies
785 views
Question about Calculation of Dietary index in the NHANES Database
index di-gm dietary nhanes
written by 城玮 0
0 votes
1 reply
1.1K views
Detection SNPs and Indels Bacteria
snps
updated by Istvan Albert 10K • | written by Eltercertopico 0
0 votes
4 replies
1.3K views
protease candidates for my protein of interest
cleaving-site proteases protein
written by Fatemeh 5
0 votes
3 replies
1.1K views
Different number of fragments after doublets removal in each run
archr
written by Bioinformatics_16 0
0 votes
2 replies
1.1K views
Seeking Guidance on Next Steps for DNA Methylation Biomarker Screening in Cancer Prognosis
early-cancer-screening tcga epigenomics dna-methylation cancer-prognosis
written by Riley J 0
0 votes
1 reply
854 views
Help with Panel of Normal (PON)
somatic-mutation pon
updated by Ram 4.5K • | written by TJ 0
1 vote
5 replies
2.0K views
Why don't I see people calculating FPKM from normalized read counts?
normalization rna-seq
updated by kalavattam 85 • | written by shelkmike 201
0 votes
9 replies
2.8K views
Error during running wf-bacterial-genome (nextflow run epi2me-labs/wf-bacterial-genomes).
epi2me medaka
updated by GenoMax 16K • | written by Anurag 0
0 votes
0 replies
790 views
freebayes with pools of different number of individuals
freebayes poolseq
written by Jeanlain 0
0 votes
3 replies
1.3K views
Insight into Trimmomatic
trimmomatic trimming reads
updated by GenoMax 16K • | written by jh5ym 0
0 votes
3 replies
2.1K views
Trouble when uploading FASTQ files on NCBI
rnaseq ncbi
written by Gerard 2
0 votes
4 replies
2.1K views
SyntaxError in file /snakefile, line 22: invalid decimal literal: None
python snakemake
updated by Jesse 94 • | written by Ana 1
1 vote
2 replies
1.6K views
News: Building an mmCIF parser for enzyme structure analysis — feedback & ideas welcome!
mmcif
written by Shravya 0
0 votes
0 replies
1.0K views
News: Course: Introduction to Genome Annotation (Online, 19–22 May) - last call
gene-prediction genome-annotation gene-models
written by Physalia-courses 281
0 votes
1 reply
1.2K views
Error with running cellranger-atac count
cellranger atac single-cell
updated by Ram 4.5K • | written by Khôi 0
0 votes
2 replies
1.5K views
HIC-pro with Forward and reverse reads not paired even when I use their test data.
hic-pro
written by Aki 2
0 votes
1 reply
1.1K views
Using DEXseq on kallisto tsv outputs ?
alignement dexseq kallisto
updated by Gordon Smyth 916 • | written by Gerard 2
0 votes
1 reply
1.9K views
Job: 2025 Arrowhead AI/LLM for Computational Biology and Data Science Internship
intern
updated by Simon 0 • | written by Shicheng Guo 963
0 votes
2 replies
1.6K views
ChIP-seq gene blacklist for Rattus norvegicus
rat blacklist chip-seq
updated by GenoMax 16K • | written by Thomas 0
0 votes
10 replies
3.4K views
Extract length of sample sequence from vcf
microsatellites bcftools vcf indels variants
updated by cmdcolin 448 • | written by jahnreinhard.ringger 0
0 votes
3 replies
1.6K views
Is it reasonable to do "Gene Regulatory Network Inference" for each cell type and do differential GRN
grn scrna-seq
updated by Hao 3 • | written by shangguandong1996 5
0 votes
2 replies
1.2K views
Blastx issue
blastx lncrna
updated by Ram 4.5K • | written by Avik 0
0 votes
9 replies
3.0K views
TPM vs FPKM divergence at high values
tpm fpkm normalisation
updated by Istvan Albert 10K • | written by megancgrdnr 0
3 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, April 14, 2025
herald
written by Biostar 380
1 vote
5 replies
1.6K views
What is the best way to know if a pair of genes is random?
go-terms genes
written by Ana 1
0 votes
1 reply
1.7K views
How to save the AlphaFold PAE plot as an image in ChimeraX using command line ?
pae chimerax alphafold
updated by LauferVA 497 • | written by Picasa 71
Recent Votes
Recent Locations
Recent Replies