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0 votes
1 reply
1.3K views
Forum: Questions on what to focus on in the next 3-4 years of my research
career offtopic path
written by Abiodun • Abiodun
0 votes
7 replies
1.7K views
Error in importing data from 10x genomics into RStudio
rstudio scrna h5
updated by Ram Ram • written by himanshu0102 • himanshu0102
0 votes
2 replies
837 views
WGS for CNV and Aneuploidy analysis
cnv aneuploidy wgs
written by bioinfo1990 • bioinfo1990
0 votes
0 replies
530 views
News: Course: Phylogenetic Comparative Methods in R – May 12–16 (Online)
r phylogenetic-comparative-methods ultrametric-phylogenies
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
2 replies
1.1K views
Merge and unique multiple complete sam files from identical fastq files
samtools aligment sambamba wgbs wgs
written by JustinZhang • JustinZhang
0 votes
1 reply
1.2K views
How to obtain TPM data after batch effect correction from count data obtained using RSEM
star rna-seq batch rsem effect
updated by Gordon Smyth Gordon Smyth • written by Apprentice Apprentice
0 votes
2 replies
1.4K views
Missing short indels from vcf
bcftools shortindels mpileup
written by kbranger • kbranger
0 votes
2 replies
1.3K views
Choosing the best clustering method for a certain methylation data
dmr k-means hierarchical clustering methylation
updated by 5heikki 5heikki • written by Sophia • Sophia
0 votes
16 replies
3.3K views
MultiQC_report
adapter quality-control fastqc multiqc
written by AIMAR • AIMAR
0 votes
3 replies
1.6K views
Forum: How to get into research for an absolute beginners
research
updated by Yugan Gogul Muthukumar • Yugan Gogul Muthukumar • written by jpeduprep • jpeduprep
0 votes
0 replies
720 views
News: Online course — Comparative Genomics — 7–11 April
snvs comparativegenomics svs genomeannotation
written by Physalia-courses Physalia-courses
0 votes
2 replies
922 views
how to do a corellation analysis of multiple CRISPR data sets
crispr-screen batch-effect correlation
updated by Ram Ram • written by Assa Yeroslaviz Assa Yeroslaviz
1 vote
5 replies
1.9K views
Alternatives to UCSC genome browser for obtaining gene coordinates
browser ucsc
written by shpak.max • shpak.max
0 votes
12 replies
2.3K views
Tool: Introducing Grantease: Go From RFA to First Draft Grant Proposal in 15 Minutes
ai biology grants nih litreview
updated by jared.andrews07 jared.andrews07 • written by Will • Will
0 votes
0 replies
1.4K views
Job: Postdoctoral Position in Computational Protein Design and Molecular Modelling
protein-design molecular-modeling postdoc
updated by Ram Ram • written by Sophie • Sophie
0 votes
1 reply
859 views
How to put distinct colors to connection bridges in the Sankey plot ?
r python sankey
updated by zx8754 zx8754 • written by ohtang7 • ohtang7
0 votes
1 reply
963 views
PCA comparison of cell line vs tumors
rnaseq sequencing pca normalization
updated by ATpoint ATpoint • written by karlensberg • karlensberg
0 votes
9 replies
2.1K views
Find the reads which correspond to DP of vcf
bam variant vcf sam2tsv
updated by Pierre Lindenbaum Pierre Lindenbaum • written by totoroGirl • totoroGirl
0 votes
1 reply
967 views
cibersortx error - $ operator is invalid for atomic vectors
cibersortx
written by Franck • Franck
0 votes
0 replies
560 views
Need help defining a threshold
david genes go
written by Ana • Ana
0 votes
4 replies
1.8K views
PCA plots in ATAC-seq replicates: Is it okay to use vst transformed data for visualization?
atac-seq diffbind
updated by ATpoint ATpoint • written by maplewj • maplewj
0 votes
1 reply
958 views
Question about `vg construct`
vg
updated by Jouni Sirén Jouni Sirén • written by zhengluo • zhengluo
0 votes
0 replies
644 views
How can I use mcmcglmm to calculate whether two traits are correlated?
glmm statistics evolution
written by 雨 • 雨
0 votes
3 replies
2.0K views
DiffBind normalization error: invalid argument type (list) - cannot make it work, everything seems correct
normalization deseq2 chipseq diffbind
written by buffealo • buffealo
0 votes
8 replies
3.2K views
FastQC on nanopore data: high proportion of polyA and polyG. Why ?
fastqc polyg ont nanopore polya
updated by lieven.sterck lieven.sterck • written by Matt • Matt
76 votes
32 replies
35K views
Tutorial: How To Separate Illumina Based Strand Specific Rna-Seq Alignments By Strand
rna-seq
updated by Paulo • Paulo • written by Istvan Albert Istvan Albert
0 votes
4 replies
1.3K views
News: Wolfram tech for bio data analysis
plots statistics databases ai
written by dk7258859 • dk7258859
0 votes
2 replies
967 views
MULTIQC for miRNAseq data
multiqc
written by Alana Conceição Maia Lessa • Alana Conceição Maia Lessa
0 votes
1 reply
1.4K views
How to improve the mapping rate of vg giraffe
vg
updated by colindaven colindaven • written by gulin • gulin
0 votes
6 replies
1.7K views
miRNA-seq normalization
mirdeep2 normalization rna-seq mirna-seq mirna
written by paulanavarrete116 • paulanavarrete116
0 votes
2 replies
1.4K views
Issues with vg surject into paths
vg
updated by GenoMax GenoMax • written by Rugare • Rugare
1 vote
12 replies
2.9K views
Batch correction RNA-seq analysis
rna-seq combat-seq batch correction
updated by LauferVA LauferVA • written by ka132 • ka132
0 votes
2 replies
1.0K views
DEG analysys using pseudobulk from single cell RNA-seq
deg scrna-seq
written by Diego • Diego
0 votes
1 reply
930 views
Microarray platform probrID to Circ-ID problem
circrna microarray
updated by GenoMax GenoMax • written by ParastooA • ParastooA
0 votes
4 replies
1.1K views
Checking sex of a sample with sequencing data
atac-seq
written by xqyn • xqyn
0 votes
5 replies
1.6K views
Depth in Cram file does not match depth in VCF file
igv of depth snv coverage
updated by Istvan Albert Istvan Albert • written by shu8 • shu8
0 votes
1 reply
944 views
Tools for clustering genes rather than samples for bulk RNA-seq
time bulk rna-seq course clustering
updated by i.sudbery i.sudbery • written by ATS • ATS
0 votes
2 replies
1.2K views
what database should I use for de novo genome in AUGUSTUS
genome augustus galaxy annotation
updated by lieven.sterck lieven.sterck • written by Jl • Jl
0 votes
8 replies
1.9K views
Is there a tool to obtain GO terms for thousands of genes at once?
permutations genes
updated by GenoMax GenoMax • written by Ana • Ana
0 votes
1 reply
678 views
cant make the correct matrix
logfc csv
updated by lieven.sterck lieven.sterck • written by Naila • Naila
0 votes
4 replies
1.8K views
FIxing Gene Models in Funannotate
genomics funannotate fungus annotation
written by SomeOne • SomeOne
0 votes
7 replies
1.8K views
How to Make Cell Order identical Between Two Seurat Objects in R?
r seurat scrna-seq
updated by yura.grabovska • yura.grabovska • written by zhang616123 • zhang616123
0 votes
3 replies
1.2K views
Assign different color in same section of Chord diagram in R
chart r diagram plot chord
updated by Bastien Hervé Bastien Hervé • written by Jonathan Yoou • Jonathan Yoou
0 votes
0 replies
741 views
News: Live Online course: Introduction to Python, April, 2025
python programming course
written by soledad.esteban • soledad.esteban
0 votes
4 replies
1.2K views
Niormalization process in creating heatmap
z heatmap score normalization
updated by ATpoint ATpoint • written by ZuelTech • ZuelTech
0 votes
14 replies
2.6K views
Lacking exons in gtf file of a virus' genome
gtf exon mapping hazara virusgenome
updated by colindaven colindaven • written by ZuelTech • ZuelTech
0 votes
4 replies
3.5K views
Should I process two complete sets of 10x single-cell multiomics sequencing files from one donor together or separately?
10x_multiome encode cellranger_arc
updated by swbarnes2 swbarnes2 • written by Wu-Sheng Zhang • Wu-Sheng Zhang
0 votes
4 replies
1.1K views
Count matrices plotting
count matrix scanpy
written by NIkita • NIkita
0 votes
8 replies
1.8K views
Filter snRNA-seq .fastq files based on barcodes
snrna-seq scrna-seq fastq bbmap
updated by GenoMax GenoMax • written by connorjfausto • connorjfausto
0 votes
1 reply
935 views
Defining Sex Chromosomes in PLINK for a Camel Genome
plink vcf
updated by chrchang523 chrchang523 • written by Smilesky • Smilesky
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