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0 votes
0 replies
650 views
News: online course: Machine Learning Methods for Longitudinal Data
r longitudinaldata epidemiology geneexpression forecasting
written by Physalia-courses 281
0 votes
3 replies
1.1K views
deseq2 batch effect correction
r batch-effects deseq2
updated by rfran010 174 • | written by Devbio 0
0 votes
22 replies
3.8K views
How to generate identiy score between aligned sequences with Mauve?
identity score alignment mauve
updated by GenoMax 16K • | written by marongiu.luigi 79
0 votes
3 replies
1.1K views
Error in deconvolution using CIBERSORTx
cibersortx deconvolution
updated by Aspire 43 • | written by yadavsoumya647 2
0 votes
0 replies
857 views
pLoF variants for gnomAD v.4
gnomad plof variants grch38
written by Damianos P. Melidis 6
0 votes
2 replies
1.7K views
Genomic Data Portal (GDC) download a given a link file
gdc r tcga tcgabiolinks maftools
updated by Zhenyu Zhang 130 • | written by bioinformagician 0
0 votes
1 reply
776 views
Finding matched RNA-seq and Ribo-seq datasets for Nicotiana benthamiana under the same condition
rna-seq ribo-seq translation-efficiency dataset-search nicotiana-benthamiana
updated by colindaven 844 • | written by Farshid 0
0 votes
5 replies
1.5K views
Limma model gives weird results
model multivariate limma
written by leranwangcs 15
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5 replies
1.9K views
How to download the entire C. elegans genome from WormBase into Excel with automated gene descriptions
gene wormbase celegans
written by bioinformatics_rk 1
0 votes
0 replies
1.4K views
Job: Postdoctoral Research Fellow, multi-omics, Univ of Nebraska Medical Center, Omaha, NE, USA
microbiome postdoc metagenome transcriptome metabolome
updated by GenoMax 16K • | written by era 0
0 votes
0 replies
807 views
How to deal with the clusterProfiler analysis result?
clusterprofiler
updated by GenoMax 16K • | written by Tundup 1
0 votes
0 replies
878 views
News: Genome Bioinformatics Summer School: OMICSS-25
training bioinformatics school
written by Lilit 0
0 votes
2 replies
1.2K views
Unable to find mitochondrial genes in latest rat genome(GRCr8)
seurat genome mitochondrialgenes ncbi singlecell
written by dxj294 0
1 vote
0 replies
925 views
Haplotype reference for ShapeIt (ShapeIt5)
phasing
written by evan.kransdorf 1
0 votes
6 replies
1.7K views
Pre-Made STAR Index for mm10 Mouse Genome
star
updated by colindaven 844 • | written by littlebioinformatician 0
0 votes
1 reply
778 views
The volcano plot shows data with an arm-shaped enrichment.
volcanoplot
updated by ATpoint 9.1K • | written by lea.LD 0
0 votes
0 replies
629 views
Tool: GENetLib: A Python Library for Gene–environment Interaction Analysis via Deep Learning
gene-environment interaction analysis
written by Barry 0
2 votes
10 replies
2.8K views
STAR vs. Kallisto
star kallisto alignment rna-seq mapping
updated by dsull 781 • | written by gogeni5529 9
0 votes
1 reply
676 views
News: Phylogenetic Comparative Methods in R (12–16 May, Online) - only 2 seats left
r phylogenetic-comparative-methods
written by Physalia-courses 281
0 votes
1 reply
1.0K views
Biostar handbook
handbook biostar
updated by GenoMax 16K • | written by himanshu0102 1
0 votes
2 replies
2.1K views
pangenome - Create a diagram venn
roary grep awk pangenome venn
updated by mplace 4 • | written by BATMAN 0
0 votes
4 replies
1.3K views
Addressing two nuisance factors in RNAseq
bulkrnaseq
updated by ATpoint 9.1K • | written by jkim 25
1 vote
5 replies
2.0K views
DRAGEN FILTER
dragen variant-calling
updated by GenoMax 16K • | written by theresia.celine 1
0 votes
1 reply
1.1K views
Interpretation of the results: PCA
proteomics pca
written by Ariadna 2
0 votes
5 replies
1.6K views
How to check normal BAM_files before create a Panel Of Normals (PoN)
gatk variant_calling pon
written by AIMAR 7
0 votes
1 reply
986 views
how to handle infinite M-values in methylation array data
m-value methylation infinite array
updated by Basti 210 • | written by matt192 0
0 votes
3 replies
2.4K views
Free and redistributable genomic data sets?
data software-development genomics
updated by Meeru 1 • | written by woemler 17
1 vote
6 replies
2.7K views
Rna-seq data
data rna-seq
updated by ehaag 10 • | written by biology_inform 6
1 vote
3 replies
1.8K views
RNAseq example data
expression rna-seq data next-gen
updated by ehaag 10 • | written by rakinitopo 1
0 votes
1 reply
897 views
Transcript_id with "-0" after "flair collapse"
flair
updated by GenoMax 16K • | written by anna_shin 0
0 votes
0 replies
727 views
Can I use glucose measured using two different devices in my study?
normalization standardization transformation
written by Faith 5
0 votes
3 replies
1.8K views
Snakemake - pipeline shut down without error
snakemake
written by bhumm 20
0 votes
2 replies
1.1K views
Source for `transcript_name` in GTFs
gtf
updated by Jorge - Ensembl 4 • | written by gernophil 15
1 vote
5 replies
2.0K views
Tool: Lightweight bash pipeline for ddRADseq read pre-processing, demultiplexing, and de-duplication using cutadapt
rad-seq ddradseq demultiplexing deduplication
written by Rafal 7
0 votes
2 replies
1.0K views
How to normalised DNA sequencing depth for genomic variant discovery ?
normalisation read-depth variant-calling
updated by Ram 4.5K • | written by AIMAR 7
0 votes
4 replies
1.3K views
RNASeq featureCounts Help Needed
fungi featurecounts rnaseq
written by SomeOne 33
0 votes
1 reply
947 views
PAUP* error with exporting result file
paup svdquartet
updated by Mark 173 • | written by ylkim9 0
0 votes
1 reply
963 views
I need to convert Axiom output to PLINK format I did not find annotation.db
axiom plink apt-format-result
updated by GenoMax 16K • | written by AlmuhayyaA 0
0 votes
3 replies
1.2K views
How to merge heterogeneously normalized RNA-seq datasets for meta-analysis?
normalization rna-seq
updated by ATpoint 9.1K • | written by pipelinfections 0
1 vote
1 reply
979 views
Tool: I packaged some tools in python pypi for Windows (fastqc, bowtie2, samtools)
python pypi
updated by Dunois 301 • | written by Cris 1
0 votes
4 replies
1.1K views
Transcript ID
id transcript
updated by Arup Ghosh 402 • | written by cheong 0
0 votes
2 replies
973 views
Galaxy + RStudio
r rna-seq rstudio
updated by Mark 173 • | written by justus 0
0 votes
18 replies
4.9K views
How to limit fasta header to 40 characters?
unix seqkit fasta
updated by jena 33 • | written by fishingline37 0
1 vote
2 replies
949 views
Transcript level quantification and gene length scaling for rRNA depleted libraries
rnaseq
updated by dsull 781 • | written by marc.zimmerli 1
0 votes
0 replies
653 views
Model diagnostics for GAM (Generalised Additive Model)
gam mgcv generalized-additive-model
written by Tuấn Anh 0
1 vote
5 replies
2.7K views
Forum: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
biotech startup
updated by Darked89 469 • | written by Novoo 1
0 votes
1 reply
1.0K views
landscape of RNA types and their functions/ scRNA
transcriptomics scrna biology
updated by ATpoint 9.1K • | written by Ariadna 2
0 votes
7 replies
2.1K views
Is vg toolkit suitable for haplotype calling?
pangenome haplotype vg
updated by Jordan M Eizenga 78 • | written by Pau 0
0 votes
0 replies
541 views
Dfam annotations
dfam
written by frarodmar17 4
0 votes
3 replies
2.0K views
miRNA alignment and count generation
aligment mapping bowtie mirnas
updated by i.sudbery 2.3K • | written by omicon 4
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