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0 votes
16 replies
3.1K views
Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
cram xa compress
updated by JustinZhang • JustinZhang • written by Maarten • Maarten
0 votes
10 replies
3.1K views
Which additional files are needed for the -taxids option in blast?
decontamination taxids blastn
updated by GenoMax GenoMax • written by WaspInSpace • WaspInSpace
0 votes
0 replies
1.3K views
Job: Assistant, Associate, or Full Project Scientist in Neurobiology
biology neuroscience neurobiology
written by UCSDBioSci • UCSDBioSci
0 votes
8 replies
5.0K views
Forum: i dont know if its related to here or not but it can be very interesting discussion.
biotechnology pills pharma biology offtopic
updated by Dunois • Dunois • written by suleyman • suleyman
0 votes
3 replies
1.2K views
Is Centering and Scaling Essential for Expression Data as Input for Machine Learning Algorithms?
featureselection microarray preprocessing
written by Sib • Sib
0 votes
0 replies
738 views
News: Online Course: Machine learning for multi-omics integration (9–11 June)
machine-learning mult-omics
written by Physalia-courses Physalia-courses
0 votes
2 replies
1.2K views
Single Nuclei RNA-Sequencing Analysis Without CellRanger
cellranger single-cell snrna-seq
written by 16_masques.vole • 16_masques.vole
0 votes
1 reply
906 views
Demultiplexing samples when barcodes repeat: Any advice?
seurat demultiplex singlecell scrnaseq
updated by Pratik Pratik • written by tia • tia
0 votes
1 reply
2.0K views
Unable to generate hierarchical and circle plot using CellChat
cellchat scrnaseq seurat
written by S • S
0 votes
8 replies
2.2K views
Discrepancy between positions on IGV and NCBI's PrimerBLAST
igv primer blast
written by Rozita • Rozita
0 votes
2 replies
935 views
Steps for meta-analysis
meta-analysis differential-expression
updated by Ram Ram • written by majorprogeria • majorprogeria
4 votes
1 reply
814 views
News: The IGB team needs your help! Write a letter of support to keep the Integrated Genome Browser running!
igb integrated-genome-browser funding
updated by microfuge microfuge • written by Nowlan Freese Nowlan Freese
0 votes
0 replies
608 views
how pd tag were defined in gaf file
vg
written by chuanj8848 • chuanj8848
0 votes
4 replies
2.2K views
SRA Toolkit - three fastq files - which is which?
scrna sratoolkit
updated by GenoMax GenoMax • written by Neat • Neat
1 vote
0 replies
26K views
Herald: The Biostar Herald for Wednesday, April 09, 2025
herald
written by Biostar Biostar
1 vote
6 replies
2.4K views
Methods for directional pathway analysis of DEGs?
pathway-analysis ora gsea limma
updated by Gordon Smyth Gordon Smyth • written by Steven • Steven
0 votes
0 replies
867 views
GTDB-tk classify_wf
gtdb-tk classification taxonomic
written by pranjalarun10 • pranjalarun10
0 votes
1 reply
931 views
Help finding proteases that most likely cleaved a peptide from a full-length protein
r peptides proteasix
updated by Fatemeh • Fatemeh • written by georgiamorgannn • georgiamorgannn
0 votes
1 reply
1.5K views
ADMIXTOOLS: qp3pop fatal error (probably missing pop)
qp3pop f3test admixtools
updated by Duy • Duy • written by francesco.fontani2 • francesco.fontani2
0 votes
2 replies
1.2K views
Annotate GFA with coverage depth
vg
written by elcortegano elcortegano
0 votes
4 replies
3.0K views
Query coverage high, E-value low, and identity low - Blastp results interpretation and article recommended?
sequence-analysis blastp protein
updated by Mensur Dlakic Mensur Dlakic • written by Luana JBC • Luana JBC
0 votes
0 replies
584 views
Need Help Regarding Back-Splicing Junction Coordinates in CIRI2 Output
circrna ciri2
updated by GenoMax GenoMax • written by Faraz • Faraz
1 vote
6 replies
1.9K views
Short reads to identify stuctural variants
sv long-read short-read
written by priya.bmg • priya.bmg
0 votes
0 replies
1.1K views
Best approach for SNP calling in tumor single-cell multiome data (scRNA-seq + scATAC-seq) for CNV analysis
variant snp single-cell
written by nilaylale88 • nilaylale88
0 votes
0 replies
574 views
News: News:Workshop:Virtual Genome Assembly, April 15-17
virtual-workshop genome-assembly uconn
updated by Ram Ram • written by zsc25001 • zsc25001
0 votes
3 replies
1.0K views
C.reinhardtii single-cell Seurat object - gene names instead of loci
loci chlamydomonas single-cell
updated by GenoMax GenoMax • written by Ana • Ana
0 votes
4 replies
1.4K views
Snakemake Global Environment Container
snakemake conda singularity
written by meetmet • meetmet
0 votes
2 replies
1.0K views
GTF repeatmasker annotation file
repeatmasker gtf
updated by rfran010 • rfran010 • written by frarodmar17 • frarodmar17
0 votes
2 replies
2.0K views
Searching for online tools to prepare mitochondrial codon usage
genome
updated by aboozar.soorni • aboozar.soorni • written by puipui • puipui
0 votes
1 reply
790 views
Getting sequences fragments using pysam
sequencing pysam reads wgs
updated by i.sudbery i.sudbery • written by Juls • Juls
1 vote
9 replies
4.0K views
Does EnhancedVolcano() supports crosstalk()?
enhancedvolcano crosstalk r ggplot
updated by GenoMax GenoMax • written by IrK IrK
0 votes
1 reply
1.2K views
How to select GEO datasets for differential expression analysis using GEO2R
geo degs geo2r
updated by ATpoint ATpoint • written by dreamer247 • dreamer247
0 votes
0 replies
858 views
Blog: Unlocking the Cellular Universe: The Importance of Single-Cell Sequencing in Animal and Plant Research
single-cell
written by Novogene • Novogene
0 votes
4 replies
1.5K views
PopGenome lost individual information
popgenome
updated by Arup Ghosh Arup Ghosh • written by Yixuan • Yixuan
0 votes
2 replies
1.2K views
Question About Handling Technical Replicates in ATAC-seq
technical-replicate atacseq
written by LuciaNhu • LuciaNhu
1 vote
16 replies
22K views
How to convert vcf to 23andme format
genome sequencing snp
updated by ngelbal • ngelbal • written by alec_djinn alec_djinn
0 votes
7 replies
1.7K views
Poor alignment rates using Bowtie
aligment bowtie2 bowtie mirnas
updated by Istvan Albert Istvan Albert • written by omicon • omicon
0 votes
5 replies
1.3K views
Polishing raw nanopore reads with Pacbio
polishing assembly
written by samuel.a.odonnell samuel.a.odonnell
0 votes
5 replies
1.6K views
bbduk.sh trimming to BAM output file
bbduk.sh
updated by Jon • Jon • written by bge • bge
0 votes
3 replies
1.2K views
Identifying domain of long-read assembled contig
longread taxonomy identification contig
updated by Mensur Dlakic Mensur Dlakic • written by Gio • Gio
0 votes
2 replies
1.9K views
Why does Radian run so much slower than vanilla R?
r python radian vs-code
updated by J.Gute • J.Gute • written by RR • RR
0 votes
9 replies
7.7K views
About the Tool FASTP
quality-control reads fastp
updated by shelkmike shelkmike • written by AIMAR • AIMAR
0 votes
0 replies
592 views
Significant SNPs with the same effect in FarmCPU
effect-size gwas farmcpu likage-disequilibrium
written by Noctiluca • Noctiluca
0 votes
11 replies
2.7K views
Larger genome size than expected-please help
genome nanopore size minimap2
written by alexandrakortsi • alexandrakortsi
0 votes
0 replies
1.3K views
Job: Postdoc ML/AI in Genomics & Bioinformatics at Duke University
postodoc genomics ai
written by alwayshope • alwayshope
0 votes
1 reply
665 views
analyze gene expression of 3 genes in RNA-Seq data
r rna-seq
updated by ATpoint ATpoint • written by pinheirofabiano • pinheirofabiano
0 votes
1 reply
1.1K views
methRead takes too long
methylkit
updated by Alexander Blume • Alexander Blume • written by CTLong • CTLong
0 votes
0 replies
520 views
rrvgo::getGoSize error
revigo go-terms rrvgo
updated by Ram Ram • written by Ana • Ana
0 votes
0 replies
666 views
Genotype Imputation for VCF File via API Using R ?
genotype-imputation vcf api
written by Ahmed Jaber • Ahmed Jaber
0 votes
0 replies
441 views
How label Group list after integratin scRNA-seq and scATAC-seq data
archr
written by Bioinformatics_16 • Bioinformatics_16
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