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4 votes
3 replies
1.2K views
Tool: RNAseq Power Calculator
calculator replicates rnaseq statistics power
updated by Sophie 0 • | written by Rafal 7
0 votes
3 replies
1.2K views
Association (Protein interaction) in Intact database results what can really mean?
protein-protein-interaction database protein proteins intact
updated by Mensur Dlakic 3.0K • | written by Bendegúz 0
0 votes
4 replies
1.6K views
About FastP Tool
raw quality_control preprocessing alignment reads
written by AIMAR 7
0 votes
9 replies
2.3K views
Transcript identification and quantification
splitseq transcript scrna
written by anton.avramov 0
0 votes
1 reply
794 views
Treatment of nanoparticles after buying before the experiment
fermentation treatment nanoparticles dark
updated by ATpoint 9.1K • | written by Nick 0
2 votes
1 reply
1.1K views
Tool: Accessible color palettes for charts and dataviz
dataviz
updated by Bastien Hervé 680 • | written by Pierre 2
0 votes
4 replies
1.9K views
Warning in bcftools when subsetting a VCF by variant ID
bcftools vcf beagle5.5
updated by Pierre Lindenbaum 17K • | written by Mwangana 0
0 votes
2 replies
1.1K views
Lucidea Array Spotter - Question about machinery
sequencing microarray
updated by GenoMax 16K • | written by Taylor 0
0 votes
5 replies
2.7K views
Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
slingshot pca seurat scater single-cell
updated by Bastien Hervé 680 • | written by txema.heredia 31
0 votes
6 replies
1.5K views
How can I find KO IDs for ORF sequences in a large FASTA file?
kegg orf
updated by Mensur Dlakic 3.0K • | written by Nikesh 0
0 votes
0 replies
663 views
Single MAG Recruitment to multiple metaT Samples
metagenomics rna-seq transcriptomics
written by zjhennin 0
0 votes
1 reply
1.5K views
Normalization - Tissue specificity analysis
gtex
updated by Pallavi 0 • | written by Filago 11
2 votes
4 replies
3.7K views
Transcript Specific Expression Data
rna-seq
updated by Pallavi 0 • | written by disco 3
3 votes
6 replies
9.2K views
Database To Look For Tissue-Specific Transcript Expression Of The Same Gene.
transcript
updated by Pallavi 0 • | written by michealsmith 80
1 vote
6 replies
3.3K views
Tool: Bioinformatics Docker Images Project (https://pegi3s.github.io/dockerfiles/)
containers docker
updated by barslmn 245 • | written by pegi3sdocker 1
1 vote
0 replies
1.5K views
Job: Looking for a mentor
health mentor informatics
updated by GenoMax 16K • | written by yoav.lama 1
0 votes
0 replies
1.8K views
Job: Postdoc fellow - genetics, proteomics, single cell and bioinformatics, Indiana University, Indianapolis, USA
single-cell bioinformatics proteomics genetics
updated by Ram 4.5K • | written by Jingwen 0
0 votes
0 replies
748 views
Strand bias and placement bias in variant calls
variant filter
updated by Pierre Lindenbaum 17K • | written by Carolyn 0
0 votes
0 replies
814 views
STARsolo for multiome GEX: trimming (--clip5pNbases) & whitelist handling
starsolo multiome whitelist clip5pnbases
written by IrK 10
0 votes
8 replies
1.6K views
Featurecounts: Unexpected number of features
featurecounts
written by JourneyToAbyss 25
0 votes
13 replies
12K views
GVSA: problem with gene identifier
gvsa rna-seq gsea
updated by Saravana 0 • | written by cmgraef 1
0 votes
0 replies
757 views
News: Workshop: Virtual Variant Detection, May 20-22
variantdetection workshop uconn
written by zsc25001 1
0 votes
3 replies
1.6K views
Best way to combine biological replicate peaks?
atac-seq
updated by jared.andrews07 1.9K • | written by SpartanII 0
0 votes
5 replies
1.5K views
Filtering HMMSCAN Domtblout Output when using Metagenomic Sequence as Input
hmmscan sequences domtblout metagenomic
updated by Mensur Dlakic 3.0K • | written by Jane123 0
0 votes
1 reply
834 views
I have doubts regarding conducting meta-analysis of differentially expressed genes
meta-analysis differential-gene-expression
updated by LChart 518 • | written by Rohan 0
0 votes
7 replies
2.4K views
Create local Blast database alias with blastdb_aliastool fails
blast
updated by GenoMax 16K • | written by etienne 0
0 votes
2 replies
1.2K views
Why is this interaction result not significant in DESeq2
deg de interaction deseq2 rna-seq
updated by yura.grabovska 94 • | written by Guillermo 1
0 votes
2 replies
1.0K views
Combining scRNA-seq datasets that have been processed differently
immunology seurat
written by S 0
0 votes
1 reply
969 views
Problem with galaxy's Maxquant
proteomics maxquant galaxy
updated by GenoMax 16K • | written by Chris K 1
0 votes
0 replies
668 views
Is there any way to treat antibody titers as continuous data for microbiome analysis?
antibody-titers immunology microbiome
written by nmarin 0
16 votes
11 replies
53K views
When and why is bwa aln better then bwa mem?
aln comparison bwa mem
written by dariober 1.5K
1 vote
1 reply
784 views
How to deal polyploid and aneuploid sugarcane genome R570 for variant calling
aneuploid
updated by dthorbur 350 • | written by Bushra Bibi 8
0 votes
2 replies
935 views
False positives annotation of Augustus?
augustus training
updated by lieven.sterck 1.6K • | written by Joseph 0
0 votes
2 replies
1.3K views
Mapping SNPs to genes
biomart snp ensembl r gene
written by Nigussie 0
0 votes
2 replies
852 views
Rockhopper Reference Genome Error
rockhopper
written by ATS 1
0 votes
0 replies
742 views
What can cause Faststructure to produce really high K clusters as optimal (e.g. 12 - 14)
snp vcf population
written by Drew 1
0 votes
7 replies
2.1K views
Trouble finding datasets
geo sra
updated by ehaag 10 • | written by SHXVRR 2
1 vote
2 replies
1.8K views
Imputation server failing to see samples in VCF files
imputation vcf
updated by Andresa Raquel Capodifoglio 0 • | written by Ben 1
0 votes
3 replies
1.2K views
Read Mapping of Reads to Reference Genome Shows Extreme Bias
mapping read bwa-mem coverage
updated by Michael Dondrup 5.6K • | written by Lawrence 0
0 votes
0 replies
817 views
News: Introduction to Python for Biologists (IPYB01)
python
updated by GenoMax 16K • | written by oliverhooker 14
0 votes
0 replies
685 views
News: Machine Learning using Python (MLUP01)
python
updated by GenoMax 16K • | written by oliverhooker 14
0 votes
2 replies
1.1K views
Interpreting a vcf file
variant vcf
updated by cmdcolin 448 • | written by ramiro.barrantes 6
3 votes
0 replies
26K views
Herald: The Biostar Herald for Tuesday, April 29, 2025
herald
written by Biostar 380
1 vote
2 replies
2.5K views
Best choices for DGE and pathway enrichment analysis in single cell data using pseudobulk?
deg gsea single-cell pseudobulk
written by txema.heredia 31
0 votes
8 replies
4.0K views
Cluster annotation in single cell
single-cell
updated by Ethan 0 • | written by synat.keam 12
1 vote
6 replies
8.9K views
Manual annotation of cell types in single cell RNA-seq
seurat single_cell annotation
updated by Ethan 0 • | written by Gene_MMP8 25
0 votes
7 replies
1.6K views
Clustal Omega stand alone versus website percent identity matrix
clustal msa identity percent
written by sorrymouse 12
0 votes
1 reply
890 views
PCA vs sparse PCA : differences in results
ml
updated by Ram 4.5K • | written by Ariadna 2
0 votes
3 replies
1.6K views
Is this the correct DESeq2 design for model with interaction terms and batch effect and paired samples?
paired batch deseq2 interaction
updated by ATpoint 9.1K • | written by marieke 1
0 votes
3 replies
3.0K views
Has the TRON Expression Atlas closed?
rna-seq cell-line
updated by Adam 0 • | written by fracarb8 176
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