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0 votes
0 replies
704 views
Can I use glucose measured using two different devices in my study?
normalization standardization transformation
written by Faith • Faith
0 votes
3 replies
1.7K views
Snakemake - pipeline shut down without error
snakemake
written by bhumm • bhumm
0 votes
2 replies
1.1K views
Source for `transcript_name` in GTFs
gtf
updated by Jorge - Ensembl • Jorge - Ensembl • written by gernophil • gernophil
1 vote
5 replies
2.0K views
Tool: Lightweight bash pipeline for ddRADseq read pre-processing, demultiplexing, and de-duplication using cutadapt
rad-seq ddradseq demultiplexing deduplication
written by Rafal • Rafal
0 votes
2 replies
1.0K views
How to normalised DNA sequencing depth for genomic variant discovery ?
normalisation read-depth variant-calling
updated by Ram Ram • written by AIMAR • AIMAR
0 votes
4 replies
1.3K views
RNASeq featureCounts Help Needed
fungi featurecounts rnaseq
written by SomeOne • SomeOne
0 votes
1 reply
931 views
PAUP* error with exporting result file
paup svdquartet
updated by Mark Mark • written by ylkim9 • ylkim9
0 votes
1 reply
950 views
I need to convert Axiom output to PLINK format I did not find annotation.db
axiom plink apt-format-result
updated by GenoMax GenoMax • written by AlmuhayyaA • AlmuhayyaA
0 votes
3 replies
1.2K views
How to merge heterogeneously normalized RNA-seq datasets for meta-analysis?
normalization rna-seq
updated by ATpoint ATpoint • written by pipelinfections • pipelinfections
1 vote
1 reply
975 views
Tool: I packaged some tools in python pypi for Windows (fastqc, bowtie2, samtools)
python pypi
updated by Dunois • Dunois • written by Cris • Cris
0 votes
4 replies
1.1K views
Transcript ID
id transcript
updated by Arup Ghosh Arup Ghosh • written by cheong • cheong
0 votes
2 replies
951 views
Galaxy + RStudio
r rna-seq rstudio
updated by Mark Mark • written by justus • justus
0 votes
18 replies
4.9K views
How to limit fasta header to 40 characters?
unix seqkit fasta
updated by jena • jena • written by fishingline37 • fishingline37
1 vote
2 replies
940 views
Transcript level quantification and gene length scaling for rRNA depleted libraries
rnaseq
updated by dsull dsull • written by marc.zimmerli • marc.zimmerli
0 votes
0 replies
645 views
Model diagnostics for GAM (Generalised Additive Model)
gam mgcv generalized-additive-model
written by Tuấn Anh • Tuấn Anh
1 vote
5 replies
2.7K views
Forum: Small‑Lab Data Management & Analytics Tool – What are your biggest pain points?
biotech startup
updated by Darked89 Darked89 • written by Novoo • Novoo
0 votes
1 reply
1.0K views
landscape of RNA types and their functions/ scRNA
transcriptomics scrna biology
updated by ATpoint ATpoint • written by Ariadna • Ariadna
0 votes
7 replies
2.1K views
Is vg toolkit suitable for haplotype calling?
pangenome haplotype vg
updated by Jordan M Eizenga • Jordan M Eizenga • written by Pau • Pau
0 votes
0 replies
538 views
Dfam annotations
dfam
written by frarodmar17 • frarodmar17
0 votes
3 replies
1.9K views
miRNA alignment and count generation
aligment mapping bowtie mirnas
updated by i.sudbery i.sudbery • written by omicon • omicon
0 votes
2 replies
980 views
Cytoscape Node Size Mapping
cytoscape
written by William • William
0 votes
2 replies
886 views
Deeptools: Custom gcbias plots in R possible?
computegcbias deeptools
written by RJDan • RJDan
0 votes
3 replies
1.7K views
HOMER Motif Analysis-- homer2 error
rna-seq homer
updated by ATpoint ATpoint • written by HypoGG • HypoGG
4 votes
0 replies
26K views
Herald: The Biostar Herald for Monday, April 21, 2025
herald
written by Biostar Biostar
0 votes
4 replies
1.5K views
Forum: ELISA‑Focused Lab Management & Analysis App – Would You Use It?
biotech startup
updated by Ram Ram • written by Novoo • Novoo
0 votes
0 replies
1.2K views
Job: Research Fellow in Cancer Evolution (Deadline 30 Apr 2025)
cancer-phylogenetics chromosomal-instability
updated by Ram Ram • written by Bingxin • Bingxin
1 vote
10 replies
3.0K views
Proper preprocessing for ML after limma, quantile normalization and log2 transformation: Is standardization still necessary?
featureselection microarray preprocessing
updated by Mensur Dlakic Mensur Dlakic • written by Sib • Sib
0 votes
0 replies
717 views
How to get gene count and transcript count from Stringtie
stringtie
updated by GenoMax GenoMax • written by Abieskawa • Abieskawa
0 votes
1 reply
1.2K views
Any recommendation for calculating Fu and Li's D using RStudio?
popgenome
updated by Michael Dondrup Michael Dondrup • written by Chatchapon • Chatchapon
0 votes
4 replies
1.6K views
Running out of disc space with wsl2
memory wsl2 capacity disc
updated by Mensur Dlakic Mensur Dlakic • written by vladimir_vinarsky • vladimir_vinarsky
0 votes
2 replies
1.2K views
Filtering vcf file for variants - including non-selected variants
bedtools calling variant bcftools
written by andrebolerbarros • andrebolerbarros
0 votes
4 replies
1.7K views
UCSC's NCBI RefSeq Track tables: header differences
ucsc-genome-browswer refseq ncbi
written by Synanth • Synanth
0 votes
0 replies
789 views
sequenced noise elimination in searching for snp
snp sequencing virus
written by gagi1993 • gagi1993
0 votes
1 reply
901 views
Issue with Agilent 2100 BioAnalyzer HS DNA Assay Trace
library-preparation dna bioanalyzer
updated by GenoMax GenoMax • written by Beatrice • Beatrice
0 votes
2 replies
1.7K views
QIAseq 16S/ITS Screening Panel Primers?
16s primers metagenomics its
updated by GenoMax GenoMax • written by Isaac • Isaac
0 votes
2 replies
2.1K views
Analysing gene CNV from TCGA using TCGAbiolinks
tcga
written by Matt • Matt
0 votes
3 replies
1.4K views
How to use LOEUF plugin in VEP?
loeuf vep
updated by GenoMax GenoMax • written by Sd • Sd
0 votes
0 replies
1.4K views
Trouble with CIBERSORTx: All P-values > 0.05, Low Correlation, High RMSE – What Could Be Going Wrong?
r cibersortx cibersort script
updated by GenoMax GenoMax • written by Pumla • Pumla
0 votes
1 reply
977 views
How can I identify genes with the MSTRG notation?
r stringtie rna-seq
updated by GenoMax GenoMax • written by pinheirofabiano • pinheirofabiano
0 votes
0 replies
2.3K views
dittoHeapmap didn't work in my data set(error code :Error in .subscript.2ary(x, i, j, drop = TRUE) : subscript out of bounds)
dittoseq scrnaseq
updated by ATpoint ATpoint • written by kayah • kayah
0 votes
3 replies
1.4K views
Visualise duplications and inversions
inversions duplications
updated by cmdcolin cmdcolin • written by priya.bmg • priya.bmg
0 votes
3 replies
1.3K views
Exon-level counts via featureCounts
diffsplicedge exon rnaseq featurecounts edger
updated by rfran010 • rfran010 • written by n_navy • n_navy
0 votes
5 replies
1.7K views
Picard : Bait_interval and Target_interval
picard bed read-depth coverage
updated by Ram Ram • written by AIMAR • AIMAR
0 votes
2 replies
1.3K views
Does vg giraffe output secondary and supplimentary alignments?
vg giraffe
written by lushjia • lushjia
0 votes
0 replies
777 views
Question about Calculation of Dietary index in the NHANES Database
index di-gm dietary nhanes
written by 城玮 • 城玮
0 votes
1 reply
1.0K views
Detection SNPs and Indels Bacteria
snps
updated by Istvan Albert Istvan Albert • written by Eltercertopico • Eltercertopico
0 votes
4 replies
1.3K views
protease candidates for my protein of interest
cleaving-site proteases protein
written by Fatemeh • Fatemeh
0 votes
3 replies
1.1K views
Different number of fragments after doublets removal in each run
archr
written by Bioinformatics_16 • Bioinformatics_16
0 votes
2 replies
1.1K views
Seeking Guidance on Next Steps for DNA Methylation Biomarker Screening in Cancer Prognosis
early-cancer-screening tcga epigenomics dna-methylation cancer-prognosis
written by Riley J • Riley J
0 votes
1 reply
848 views
Help with Panel of Normal (PON)
somatic-mutation pon
updated by Ram Ram • written by TJ • TJ
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