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1 vote
5 replies
2.0K views
No variant in the Pseudoautosomal regions of gomad chrY ?
chry par vcf gnomad pseudoautosomal
updated by cmdcolin 448 • | written by Pierre Lindenbaum 17K
6 votes
6 replies
4.3K views
News: Boston Ma Us Area Folks: Software Carpentry Workshop For Women In Science Coming Up
python training
updated by GenoMax 16K • | written by Mary 1.1K
0 votes
1 reply
1.0K views
Selecting clinical rows for repeated case IDs in TCGA-BRCA data
clinical-data breast-cancer tcga
updated by Zhenyu Zhang 130 • | written by BhagyashreeWaghale 0
0 votes
2 replies
1.3K views
Kallisto to tximport to deseq2
enseml deseq2 kallisto
updated by GenoMax 16K • | written by bioinfo 19
0 votes
0 replies
736 views
Tool for Estimation of Purity and Ploidy in Precancerous Lesions
cnv purity genome ploidy
written by ting 0
1 vote
8 replies
2.6K views
Nextflow: split a FASTA file into 5 parts to enable parallel processing
nextflow workflow pipeline
written by neng 5
0 votes
1 reply
978 views
What to choose as background in statistic test genetics
test expression gene statistic
updated by Dunois 301 • | written by adigershon8897 0
0 votes
4 replies
1.6K views
differential exon usage from Salmon outputs
edger diffsplicedge deu salmon
updated by Gordon Smyth 916 • | written by n_navy 1
0 votes
0 replies
987 views
Multi-SNP Behavioral and Frequency Profile Inquiry: TPH2, GRM2, COMT, DRD2, HTR1A (Rare Interaction)
population-genetics genetic-variation epistasis snp gnomad
written by SonicSoal 0
0 votes
0 replies
663 views
News: Online course -Reproducibility in Bioinformatics - July 7–9
singularity git docker snakemake nextflow
written by Physalia-courses 281
0 votes
5 replies
1.4K views
RNA-Sequencing Analysis when control samples paired-end and tumour samples single-end
ena rna-sequencing
written by h 0
0 votes
3 replies
1.1K views
STAR aligner - how is quality and correctness tested across builds/releases?
star
updated by GenoMax 16K • | written by Arthur 0
0 votes
2 replies
1.0K views
Pathway enrichment analysis on time-series data by filtering out age comparisons
pea go rnaseq time-series
written by fullycratered 0
0 votes
10 replies
2.4K views
building snpeff database for plant
plant
updated by lieven.sterck 1.6K • | written by Bushra Bibi 8
0 votes
1 reply
819 views
How to find motif in specific region
motif chip-seq
updated by Alex Reynolds 3.6K • | written by zhang616123 0
0 votes
0 replies
723 views
How to interpret perplexing qcovhsp result in blastx
blastx qcovhsp blastn
written by samuel.himes 0
0 votes
0 replies
688 views
Representation of GT:DS INFO tag for a missing marker in a VCF file
vcf bcftools
written by Mwangana 0
0 votes
0 replies
825 views
Best Practices for Integrating RNA-seq Time Series from Multiple Studies with Varying Protocols
differential-expression meta-analysis integration rna-seq time-series
written by enee 2
1 vote
9 replies
6.7K views
bcftools query add header
bcftools
updated by GenoMax 16K • | written by User000 75
0 votes
2 replies
1.1K views
Alternative to PASApipeline
transcriptomics annotation
updated by colindaven 844 • | written by lagartija 16
0 votes
0 replies
511 views
How to Get a Genetic Map, Given the Physical Position and Genotype Data of Markers
genetic-map
updated by Ram 4.5K • | written by Daniyal 0
0 votes
7 replies
4.0K views
vcftools --weir-fst-pop returns -nan
fst vcftools
updated by Michael Dondrup 5.6K • | written by elizabeth 0
0 votes
3 replies
1.1K views
HISAT2 with Cleaned Data
hisat2 rnaseq
updated by lieven.sterck 1.6K • | written by Gordonz9494 1
0 votes
1 reply
1.1K views
Definitions for "differential expression" and "differential abundance" in RNA-seq?
rna-seq deseq abundance differential-expression
updated by Ram 4.5K • | written by tw_140 0
0 votes
5 replies
1.4K views
Efficiently find regions in bed file that are within start and end regions of another bed file.
intersect bedtools
updated by Alex Reynolds 3.6K • | written by rxs1018 0
0 votes
4 replies
1.1K views
16S Libraries With Non-Purified Short Fragments
sequencing 16s libraries magnetic beads
written by alenew.am 1
0 votes
1 reply
946 views
How to map polyA tails to barcodes in paired end reads for single cell RNA-seq
rna-seq cell polya single
updated by GenoMax 16K • | written by Ana 1
1 vote
6 replies
6.5K views
Questions related to ChromHMM+using MACS2 peak calling output bed file as input for ChromHMM?
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updated by luminea 2 • | written by m.sadman.sakib 13
1 vote
5 replies
2.2K views
Editing and Adding to a GTF file
annotation gene-id gtf
updated by Ram 4.5K • | written by Keem Uarren Eiryll 1
0 votes
2 replies
1.1K views
Averaging multiple IgG BAM files for use as a control in ChromHMM
chromhmm bam averag
updated by ATpoint 9.1K • | written by luminea 2
0 votes
3 replies
1.3K views
Deduplication rate of shotgun metagenomes using fastqc
metagenome fastqc shotgun deduplication
updated by colindaven 844 • | written by vikasmh111 0
0 votes
0 replies
696 views
News: online course: Introduction to Genome Annotation
gene-prediction genome-annotation gene-models
written by Physalia-courses 281
0 votes
2 replies
2.2K views
ValueError: Found array with 0 sample(s) (shape=(0, 138)) while a minimum of 1 is required. In metawrap - concoct binning module
concoct metawrap module
written by shevch2009 2
0 votes
7 replies
2.5K views
Circular heatmap using circos.heatmap in R
r circos heatmap circularheatmap
updated by GenoMax 16K • | written by Yukta 3
0 votes
0 replies
792 views
Zebrafish phenotype ontology enrichment analyses
ontology zebrafish
written by Li 0
0 votes
2 replies
835 views
Sequence Duplication for Single-End 3RAD Data
duplication reduced-representation
written by Sarah 0
0 votes
6 replies
2.1K views
Not retrieving Mitochondrial Genes in Single Cell analysis
single-cell
updated by Ram 4.5K • | written by guioliveirareis 1
0 votes
0 replies
576 views
News: Ancient Metagenomics course - online, May 27-29
ancient-metagenomics adna ameta
written by Physalia-courses 281
0 votes
1 reply
820 views
Issues running scAPAtrap
scapatrap polya scrnaseq
updated by GenoMax 16K • | written by Ana 1
0 votes
3 replies
1.5K views
What are BED files?
bed
updated by Alex Reynolds 3.6K • | written by Besoa 0
0 votes
8 replies
1.6K views
ggplot make boxplots more wide
ggplot2 r
written by Nona 9
1 vote
1 reply
913 views
Minimum number of samples for multi-omics data integration
multi-omics
updated by Ram 4.5K • | written by Tundup 1
1 vote
0 replies
705 views
News: Workshop: Virtual Genome Annotation, May 27–29
genomeannotation workshop uconn
written by zsc25001 1
0 votes
1 reply
868 views
Assigning a string variable on Visual Studio using python
python visual-studio
updated by Ram 4.5K • | written by arthur_alexander83 0
1 vote
4 replies
1.5K views
Tool: Gene Exons Painter
genomics visualisation exons transcripts isoforms
updated by benformatics 426 • | written by Rafal 7
0 votes
0 replies
775 views
News: Course online:Functional programming in R, May 27-30
r programming functional
written by soledad.esteban 1
3 votes
1 reply
26K views
Herald: The Biostar Herald for Monday, May 05, 2025
herald
updated by cmdcolin 448 • | written by Biostar 380
0 votes
0 replies
785 views
How to generate .AED files from .CEL files using Linux (Affymetrix CytoScan HT-CMA 96F)
ht-cma-96 analysis data affymetrix microarray
written by genetixs 2
0 votes
0 replies
789 views
News: Online course - Introduction to GWAS
r gwas statistics
written by Physalia-courses 281
0 votes
3 replies
1.1K views
Sample level genotype mapping in plink vcf output
vcf
updated by Pierre Lindenbaum 17K • | written by 1769mkc 127
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