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1 vote
2 replies
1.3K views
DESeq2 outliers-should I be concerned?
deseq2
updated by ATpoint 9.1K • | written by bioinfo 19
0 votes
2 replies
1.2K views
Trimmomatic command
star rnaseq trimmomatic
updated by swbarnes2 1.5K • | written by rajdeepboral00 7
1 vote
1 reply
1.0K views
Blog: Setaria Pan-Genome Variation: Unraveling the Story of Domestication
pan-genome
updated by cmdcolin 448 • | written by Novogene 54
0 votes
9 replies
2.9K views
Facing issue with output of nextflow pipeline
output nextflow fastqc issue
updated by colindaven 844 • | written by harsh 2
0 votes
2 replies
1.9K views
Forum: Pie Charts: to use or not to use
pie-chart graphs
updated by Joe 2.2K • | written by littlebioinformatician 0
0 votes
1 reply
841 views
Minimum Number of Cells for Downstream Analysis after subsetting a particular cell type (scRNAseq)?
cell single
updated by ATpoint 9.1K • | written by Tundup 1
0 votes
3 replies
1.2K views
Discrepancy Between Reported Nitrogen-Fixing Ability and Genomic Evidence in Acinetobacter guillouiae
nif ncbi_genome_database acinetobacter_guillouiae nitrogenase nitrogen_fixation
updated by GenoMax 16K • | written by Nafi 0
0 votes
1 reply
930 views
Target prediction
protien prediction target
updated by dthorbur 350 • | written by Samprath 0
0 votes
12 replies
3.5K views
Heatmap of a transformed deseq object with pheatmap
deseq2 pheatmap
written by caroline.zanchi 0
0 votes
0 replies
636 views
CNVkit CNVs call with threshold issues
cnvkit threshold_log2 somatic_variant
written by AIMAR 7
0 votes
6 replies
2.2K views
PRS result interpretation
risk score prs interpretation polygenic
written by trkfs 1
1 vote
1 reply
942 views
More rare variants than common variants
plink gwas
updated by LChart 518 • | written by RT 2
0 votes
1 reply
986 views
Question about vg giraffe, vg surject and Visualization tool for mapping result
vg
updated by Jordan M Eizenga 78 • | written by gulin 1
0 votes
0 replies
1.5K views
Job: Postdoctoral Fellow in Machine Learning and Computational Biology, The University of Memphis
ptsd learning bioinformatics deep genomics
written by bjdaigle 1
0 votes
4 replies
1.7K views
Pooling Replicates in Omics Analysis: Trade-off Between Cost and Data Robustness?
replicates omics pooling
updated by LChart 518 • | written by sardius 0
0 votes
1 reply
1.1K views
Regressing variables for finding Differentially expressed genes
batcheffect seurat bias scrnaseq
updated by Bastien Hervé 680 • | written by AB 39
0 votes
0 replies
1.3K views
Job: Head of Bioinformatics Facility (m/f/div) at Max Planck Institute of Epigenetics
germany e14
written by elsalatino 0
1 vote
1 reply
1.3K views
Alternatives to WGCNA
wgcna
updated by LChart 518 • | written by Poorvi 1
0 votes
9 replies
2.4K views
RNA-seq analysis
htseq-count hisat2 featurecounts star
updated by GenoMax 16K • | written by sk_24 2
0 votes
2 replies
1.9K views
Liquid Biopsy datasets
rna-seq next-gen liquid biopsy mirna cdna
updated by ehaag 10 • | written by pacocp 0
0 votes
4 replies
1.9K views
RNA virus (HIV, HCV, Influenza, or SARS-CoV-2) datasets with corresponding fitness values.
rna
updated by ehaag 10 • | written by jimmysibandah 0
0 votes
3 replies
2.1K views
Metagenomics mock datasets
metagenomics
updated by ehaag 10 • | written by enuhblaise 0
3 votes
0 replies
764 views
News: NCBI Comparative Genomics Virtual Codeathon, Sept 8-10.
genomics ncbi codeathon
written by MirianT_NCBI 83
0 votes
1 reply
1.0K views
Using structure prediction approaches to predict interaction between two proteins
protein prediction structure
updated by Mensur Dlakic 3.0K • | written by Daniel 4
0 votes
3 replies
1.4K views
How to visualize Combat-seq corrected counts
batch-correction combat-seq
written by as823jk 0
0 votes
6 replies
1.9K views
Single cell expression and accessibility integration using cellxgene data
cellxgene
written by 1769mkc 127
0 votes
1 reply
997 views
Umbrella pathways in KEGG
kegg r
updated by Arup Ghosh 402 • | written by Arindam Ghosh 55
0 votes
2 replies
828 views
Peptide protein dynamics
pepdide
updated by lieven.sterck 1.6K • | written by venkatramananspd 0
0 votes
4 replies
1.3K views
variant calling chromosome-wise from WGS data
wgs
updated by GenoMax 16K • | written by Bushra Bibi 8
0 votes
5 replies
1.3K views
Design matrix with uneven patient representation across stages
rna-seq design-matrix limma
written by Lucas 0
1 vote
2 replies
1.7K views
Forum: The best LLM or any tool to generate legal regex expression string for specific usage?
regex awk sed commands linux
updated by GenoMax 16K • | written by JustinZhang 14
0 votes
6 replies
4.2K views
minimap2 gets killed, but it doesn't explain why
minimap2
updated by Arup Ghosh 402 • | written by michael.flower.14 21
0 votes
1 reply
1.0K views
Reference-guided transcriptome assembly using multiple SRA experiments ?
assembly transcriptome projects sra
updated by lieven.sterck 1.6K • | written by debitboro 27
0 votes
10 replies
4.7K views
Minimap2 error in Flye de novo assembly
flye minimap2
written by Nilo 2
0 votes
0 replies
702 views
How to find hormone related proteins from a list of gene/proteins
r
updated by Ram 4.5K • | written by WUSCHEL 94
0 votes
0 replies
691 views
mtDNA variants from WGS data
mitogenome wgs
updated by Ram 4.5K • | written by wonde2000 0
0 votes
1 reply
873 views
Merge 1000 Genome gentotype AND genotype likelihood VCFs together
vcf liftovervcf merge
updated by Giulio Genovese 65 • | written by JourneyToAbyss 25
0 votes
0 replies
781 views
Writing genepop from genind
r genepop genind graph4lg stacks
written by eaabbott0 0
0 votes
4 replies
3.3K views
Remove all entries with duplicate names from fastq file?
fastq illumina duplicate
updated by Charles-Alexandre Roy 9 • | written by wormball 2
1 vote
1 reply
823 views
Copy Number Variants with CNVKit
cvns somatic_variant recommendations cnvkit
updated by GenoMax 16K • | written by AIMAR 7
0 votes
0 replies
689 views
Basecount calculation after alignment to multi-fasta file
multi-fasta sequence bwa consensus samtool alignment
written by aj 0
0 votes
0 replies
542 views
TEtranscripts analysis
tetranscripts
written by frarodmar17 4
0 votes
0 replies
605 views
CVNkit call commande
cvns cnvkit somatic_variant
written by AIMAR 7
0 votes
6 replies
1.8K views
FraserDataSet() error in FRASER
r splicing fraser rnaseq alternative
written by n_navy 1
0 votes
1 reply
819 views
Strange volcano - DEGs with p.adj=0 look weird
rna-seq degs
updated by manaswwm 64 • | written by noodlejackson 4
1 vote
3 replies
1.3K views
What is the difference between JASPAR IDs MA0668.3 and MA1993.2 for Neurod2?
motifs atac-seq factor jaspar transcription
updated by GenoMax 16K • | written by Ambuj 0
0 votes
0 replies
721 views
News: Online course: Introduction to R and Bioconductor
r bioconductor genomics
written by Physalia-courses 281
0 votes
0 replies
446 views
IM-fusion data analysis
im-fusion
written by frarodmar17 4
0 votes
4 replies
998 views
error in reading codelink data
readcodelinkset
written by nazaninhoseinkhan 53
0 votes
1 reply
1.0K views
DiffBind analysis with ENCODE data using R and .bed/.bam files
r chip-seq encode diffbind
updated by Aspire 43 • | written by stalo.lili 0
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