Dear all,

I hope this message finds you well.

I have whole-genome sequencing (WGS) data from cattle populations and am interested in analyzing mitochondrial DNA (mtDNA)-based diversity to explore maternal lineage variation. Could you please suggest a suitable workflow or pipeline for extracting mitogenomes from WGS data and conducting mtDNA diversity analysis?

Any recommendations on tools or best practices would be greatly appreciated. Thank you in advance for your support.

Best regards