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0 votes
3 replies
1.3K views
Deduplication rate of shotgun metagenomes using fastqc
metagenome fastqc shotgun deduplication
updated by colindaven colindaven • written by vikasmh111 • vikasmh111
0 votes
0 replies
689 views
News: online course: Introduction to Genome Annotation
gene-prediction genome-annotation gene-models
written by Physalia-courses Physalia-courses
0 votes
2 replies
2.2K views
ValueError: Found array with 0 sample(s) (shape=(0, 138)) while a minimum of 1 is required. In metawrap - concoct binning module
concoct metawrap module
written by shevch2009 • shevch2009
0 votes
7 replies
2.5K views
Circular heatmap using circos.heatmap in R
r circos heatmap circularheatmap
updated by GenoMax GenoMax • written by Yukta • Yukta
0 votes
0 replies
719 views
Zebrafish phenotype ontology enrichment analyses
ontology zebrafish
written by Li • Li
0 votes
2 replies
832 views
Sequence Duplication for Single-End 3RAD Data
duplication reduced-representation
written by Sarah • Sarah
0 votes
6 replies
2.0K views
Not retrieving Mitochondrial Genes in Single Cell analysis
single-cell
updated by Ram Ram • written by guioliveirareis • guioliveirareis
0 votes
0 replies
568 views
News: Ancient Metagenomics course - online, May 27-29
ancient-metagenomics adna ameta
written by Physalia-courses Physalia-courses
0 votes
1 reply
814 views
Issues running scAPAtrap
scapatrap polya scrnaseq
updated by GenoMax GenoMax • written by Ana • Ana
0 votes
3 replies
1.4K views
What are BED files?
bed
updated by Alex Reynolds Alex Reynolds • written by Besoa • Besoa
0 votes
8 replies
1.6K views
ggplot make boxplots more wide
ggplot2 r
written by Nona • Nona
1 vote
1 reply
899 views
Minimum number of samples for multi-omics data integration
multi-omics
updated by Ram Ram • written by Tundup • Tundup
1 vote
0 replies
694 views
News: Workshop: Virtual Genome Annotation, May 27–29
genomeannotation workshop uconn
written by zsc25001 • zsc25001
0 votes
1 reply
853 views
Assigning a string variable on Visual Studio using python
python visual-studio
updated by Ram Ram • written by arthur_alexander83 • arthur_alexander83
1 vote
4 replies
1.5K views
Tool: Gene Exons Painter
genomics visualisation exons transcripts isoforms
updated by benformatics benformatics • written by Rafal • Rafal
0 votes
0 replies
769 views
News: Course online:Functional programming in R, May 27-30
r programming functional
written by soledad.esteban • soledad.esteban
3 votes
1 reply
26K views
Herald: The Biostar Herald for Monday, May 05, 2025
herald
updated by cmdcolin cmdcolin • written by Biostar Biostar
0 votes
0 replies
777 views
How to generate .AED files from .CEL files using Linux (Affymetrix CytoScan HT-CMA 96F)
ht-cma-96 analysis data affymetrix microarray
written by genetixs • genetixs
0 votes
0 replies
784 views
News: Online course - Introduction to GWAS
r gwas statistics
written by Physalia-courses Physalia-courses
0 votes
3 replies
1.1K views
Sample level genotype mapping in plink vcf output
vcf
updated by Pierre Lindenbaum Pierre Lindenbaum • written by 1769mkc 1769mkc
4 votes
3 replies
1.2K views
Tool: RNAseq Power Calculator
calculator replicates rnaseq statistics power
updated by Sophie • Sophie • written by Rafal • Rafal
0 votes
3 replies
1.2K views
Association (Protein interaction) in Intact database results what can really mean?
protein-protein-interaction database protein proteins intact
updated by Mensur Dlakic Mensur Dlakic • written by Bendegúz • Bendegúz
0 votes
4 replies
1.5K views
About FastP Tool
raw quality_control preprocessing alignment reads
written by AIMAR • AIMAR
0 votes
9 replies
2.3K views
Transcript identification and quantification
splitseq transcript scrna
written by anton.avramov • anton.avramov
0 votes
1 reply
787 views
Treatment of nanoparticles after buying before the experiment
fermentation treatment nanoparticles dark
updated by ATpoint ATpoint • written by Nick • Nick
2 votes
1 reply
1.0K views
Tool: Accessible color palettes for charts and dataviz
dataviz
updated by Bastien Hervé Bastien Hervé • written by Pierre • Pierre
0 votes
4 replies
1.8K views
Warning in bcftools when subsetting a VCF by variant ID
bcftools vcf beagle5.5
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Mwangana • Mwangana
0 votes
2 replies
1.1K views
Lucidea Array Spotter - Question about machinery
sequencing microarray
updated by GenoMax GenoMax • written by Taylor • Taylor
0 votes
5 replies
2.6K views
Differeces between Seurat::RunPCA and scater::runPCA affect downstream analyses
slingshot pca seurat scater single-cell
updated by Bastien Hervé Bastien Hervé • written by txema.heredia • txema.heredia
0 votes
6 replies
1.5K views
How can I find KO IDs for ORF sequences in a large FASTA file?
kegg orf
updated by Mensur Dlakic Mensur Dlakic • written by Nikesh • Nikesh
0 votes
0 replies
656 views
Single MAG Recruitment to multiple metaT Samples
metagenomics rna-seq transcriptomics
written by zjhennin • zjhennin
0 votes
1 reply
1.5K views
Normalization - Tissue specificity analysis
gtex
updated by Pallavi • Pallavi • written by Filago • Filago
2 votes
4 replies
3.7K views
Transcript Specific Expression Data
rna-seq
updated by Pallavi • Pallavi • written by disco • disco
3 votes
6 replies
9.2K views
Database To Look For Tissue-Specific Transcript Expression Of The Same Gene.
transcript
updated by Pallavi • Pallavi • written by michealsmith michealsmith
1 vote
6 replies
3.3K views
Tool: Bioinformatics Docker Images Project (https://pegi3s.github.io/dockerfiles/)
containers docker
updated by barslmn • barslmn • written by pegi3sdocker • pegi3sdocker
1 vote
0 replies
1.5K views
Job: Looking for a mentor
health mentor informatics
updated by GenoMax GenoMax • written by yoav.lama • yoav.lama
0 votes
0 replies
1.8K views
Job: Postdoc fellow - genetics, proteomics, single cell and bioinformatics, Indiana University, Indianapolis, USA
single-cell bioinformatics proteomics genetics
updated by Ram Ram • written by Jingwen • Jingwen
0 votes
0 replies
734 views
Strand bias and placement bias in variant calls
variant filter
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Carolyn • Carolyn
0 votes
0 replies
792 views
STARsolo for multiome GEX: trimming (--clip5pNbases) & whitelist handling
starsolo multiome whitelist clip5pnbases
written by IrK IrK
0 votes
8 replies
1.6K views
Featurecounts: Unexpected number of features
featurecounts
written by JourneyToAbyss JourneyToAbyss
0 votes
13 replies
12K views
GVSA: problem with gene identifier
gvsa rna-seq gsea
updated by Saravana • Saravana • written by cmgraef • cmgraef
0 votes
0 replies
745 views
News: Workshop: Virtual Variant Detection, May 20-22
variantdetection workshop uconn
written by zsc25001 • zsc25001
0 votes
3 replies
1.6K views
Best way to combine biological replicate peaks?
atac-seq
updated by jared.andrews07 jared.andrews07 • written by SpartanII • SpartanII
0 votes
5 replies
1.5K views
Filtering HMMSCAN Domtblout Output when using Metagenomic Sequence as Input
hmmscan sequences domtblout metagenomic
updated by Mensur Dlakic Mensur Dlakic • written by Jane123 • Jane123
0 votes
1 reply
820 views
I have doubts regarding conducting meta-analysis of differentially expressed genes
meta-analysis differential-gene-expression
updated by LChart LChart • written by Rohan • Rohan
0 votes
7 replies
2.3K views
Create local Blast database alias with blastdb_aliastool fails
blast
updated by GenoMax GenoMax • written by etienne • etienne
0 votes
2 replies
1.2K views
Why is this interaction result not significant in DESeq2
deg de interaction deseq2 rna-seq
updated by yura.grabovska • yura.grabovska • written by Guillermo • Guillermo
0 votes
2 replies
1.0K views
Combining scRNA-seq datasets that have been processed differently
immunology seurat
written by S • S
0 votes
1 reply
955 views
Problem with galaxy's Maxquant
proteomics maxquant galaxy
updated by GenoMax GenoMax • written by Chris K • Chris K
0 votes
0 replies
664 views
Is there any way to treat antibody titers as continuous data for microbiome analysis?
antibody-titers immunology microbiome
written by nmarin • nmarin
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