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0 replies
245 views
Job: Bioinformatician - SAGC at SAHMRI Adelaide, South Australia
bioinformatician
written by Careers@SAHMRI 5
0 votes
0 replies
1.5K views
Job: Bioinformatician - SAGC at SAHMRI Adelaide, South Australia
bioinformatician
written by Careers@SAHMRI 5
15 votes
10 replies
68K views
ClusterProfiler : What is GeneRatio and BgRatio?
clusterprofiler
updated by chong.weelic 4 • | written by ZheFrench 60
0 votes
2 replies
1.7K views
GSEA and Cytoscape Enrichment maps
cytoscape rna-seq gsea
updated by GenoMax 16K • | written by kdca 0
0 votes
2 replies
1.1K views
CNVs annotation after CNVkit and clinical databases
annotation cnvs clinical_database
written by AIMAR 7
4 votes
0 replies
26K views
Herald: The Biostar Herald for Thursday, May 22, 2025
herald
written by Biostar 380
0 votes
2 replies
1.2K views
Correcting Technical Artifacts in Cross-Dataset Pseudobulk Analysis
batcheffect deseq2 pseudobulk
written by seojin.yang 0
0 votes
1 reply
1.1K views
ADMIXTURE Freezes Right Before Completion
admixture admixture
updated by pereyra.s 0 • | written by maxlaubstein 0
0 votes
3 replies
1.5K views
Remapping assembled contigs from Flye output file
assembly remapping flye
updated by Ram 4.5K • | written by synthiiihuh 0
0 votes
1 reply
1.9K views
Where to find hg38 panel-of-normals and germline VCFs without 'chr' prefix?
pon hg38 vcf mutect2 gatk
updated by Pierre Lindenbaum 17K • | written by dpgpfkdkeldi 0
0 votes
0 replies
635 views
Contigs Input For Phylogenetic Tree
contigs phylogeny nextstrain phylogenetics
written by davidmaimoun 6
0 votes
3 replies
1.2K views
assembly tool for plant data
plant
written by Bushra Bibi 8
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0 replies
1.0K views
Will using different Illumina manifest files (with only chr/position changes) affect genotype calling in GSA microarrays?
illumina manifest microarray gsa
written by windyday 0
0 votes
3 replies
1.2K views
tteximeta problem: couldn't find matching transcriptome, returning non-ranged SummarizedExperiment
teximeta salmon
updated by marco.barr 22 • | written by tarek.mohamed 37
0 votes
3 replies
1.6K views
Heatmap of rnaseq data with z-score scale
rna-seq
updated by swbarnes2 1.5K • | written by giovanna 0
0 votes
2 replies
1.4K views
Z-score for scRNA-seq data?
scrnaseq
written by S 0
0 votes
0 replies
688 views
OncodriveFML warnings
cancer_driver selection_analysis driver_genes oncodrivefml
written by yahn 1
0 votes
2 replies
1.2K views
European Variation Archive submission eva-sub-cli validation failure: "Sample name concordance check"
eva-sub-cli europeanvariationarchive submission database
updated by Timothee 0 • | written by askhat 0
0 votes
0 replies
1.7K views
Job: Project Research Scientist-I (Bioinformatics – Next Generation Sequencing Data Analysis) - India
biology computational bioinformatics
updated by Arup Ghosh 402 • | written by Rajunaik Vankudavath 0
0 votes
0 replies
810 views
News: AI for Genomics: from CNNs and LSTMs to TRANSFORMERS Course - (Online, 9-11 Sept)
transformers cnn genomics lstms ai
written by Physalia-courses 281
0 votes
1 reply
1.8K views
Anyone familiar with studies on computational neuroscience focused on consciousness, particularly in anatomical areas such as ARAS?
neuroscience computational
updated by Bastien Hervé 680 • | written by Dun 0
0 votes
1 reply
880 views
Evaluating Large CRISPR/Cas9 Deletions (~300 kb) in F0 Xenopus Embryos
crispr large mosaic cas12a f0 deletion
updated by GenoMax 16K • | written by Santex 0
0 votes
15 replies
3.6K views
Trim CDS to ORF
codon cds offset transcripts
updated by colindaven 844 • | written by jaredbernard 3
0 votes
3 replies
1.3K views
Multi-omic trajectory on CITE-Seq data
multiomic 10x single-cell transcriptomics trajectory
updated by ATpoint 9.1K • | written by firestar 173
0 votes
23 replies
5.7K views
STAR aligner problem on local laptop
rna-sequencing
updated by Sylpaper 0 • | written by Morris_Chair 39
0 votes
8 replies
3.3K views
Mageck RRA is listing negative controls as high fold change in the gene summary
python crispr mageck
updated by jared.andrews07 1.9K • | written by liz.b 0
0 votes
1 reply
843 views
RNA-seq analysis
star hisat2 featurecounts
updated by rfran010 174 • | written by sk_24 2
0 votes
2 replies
1.4K views
Obtaining Q30/Q60 Values from Fastq Files
phred quality illumina rna-seq
updated by GenoMax 16K • | written by joe_genome 7
0 votes
1 reply
1.0K views
Phylogeny aware alignment input
hoseq msa
updated by zjq6666666 0 • | written by Meto 0
0 votes
5 replies
1.7K views
The allele with index 2 is not defined in the REF/ALT columns" error after AF filtering with gnomAD Exome
gnomad bcftools vcf
written by erikatatianacs 0
1 vote
2 replies
992 views
Drastic drop in RNA-seq read mapping rate when disabling gaps in Bowtie2
bowtie2
updated by GenoMax 16K • | written by triplee0305 2
1 vote
11 replies
2.8K views
RNASeq bulk transcriptomics analysis
rnaseq trimgalore genecounts star fastqc
written by rajdeepboral00 7
0 votes
1 reply
1.3K views
SSL and Syntax Errors when using fasterq-dump (SRA Toolkit)
sratoolkit
updated by GenoMax 16K • | written by QURROTU AINI 0
0 votes
2 replies
1.2K views
Download GenomicSEM reference file
genomicsem
updated by 1769mkc 127 • | written by zhangmyharper 1
0 votes
11 replies
3.1K views
How common is it to split fastq files prior to bwa mem to increase parallelization?
mem bwa alignment
updated by Darked89 469 • | written by curious 90
0 votes
0 replies
779 views
News: UCSC Xena Webinar Series: Visualize and Analyze Bulk Sequencing Data on Xena
visualization genomics cancer
written by Mary Goldman 0
0 votes
0 replies
794 views
Deseq2 DE analysis of host-pathogen samples (model separately or jointly?)
normalization deseq2 host-pathogen rna-seq
written by r-ninja 2
0 votes
0 replies
633 views
Does vg stats support gaf file?
vg
written by Wang Cong 2
0 votes
1 reply
921 views
Longest Protein per Gene from gpff file
protein gpff
updated by lieven.sterck 1.6K • | written by reza 30
0 votes
4 replies
2.3K views
Modify read groups in BAM file
samtools bam picard dragen
updated by jkbonfield 133 • | written by Alex 0
0 votes
1 reply
1.0K views
Integration of NanoString CosMx FOVs
spatial transcriptomics
updated by Bastien Hervé 680 • | written by solo.albif 0
0 votes
4 replies
1.5K views
Bulk RNA-seq differential gene expression analysis on haplotype‑resolved diploid plant assembly
rna-seq
updated by rfran010 174 • | written by Zephy 0
2 votes
8 replies
2.6K views
Cross-species differential gene expression, finding orthologs
orthologs xspecies stringtie differential-expression
written by fe94 2
1 vote
3 replies
1.2K views
Unexpected negative correlation between gene-length and counts
rna-seq bias normalisation
updated by rfran010 174 • | written by Ben 3
2 votes
1 reply
773 views
Perturb seq
perturbseq
updated by GenoMax 16K • | written by shlo12 2
0 votes
5 replies
3.3K views
Where can I find somatic whole-genome or exome FASTQ files (from tumor samples) with validated variants and corresponding VCFs publicly available?
fastq ngs pipeline indels snvs
updated by Arup Ghosh 402 • | written by stuckinanendlessfebruary 1
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1 reply
1.1K views
How important are allele fractions when calling variants?
gatk bacteria bcftools
written by andean 0
0 votes
0 replies
1.4K views
Job: Two postdoctoral positions in generative AI and blood-based cancer detection, Aarhus University, Denmark
nucleosomes post_doc cancer_detection generativeai bioinformatics
written by Jakob Skou 0
0 votes
2 replies
2.5K views
Analysing Problem Seen In MEGA X
alignment megax muscle
updated by humarafique.1234 0 • | written by ankurhalder116 0
0 votes
0 replies
804 views
discrepancies in ORA results between g:Profiler (gost) and clusterProfiler (enrichGO)
analysis enrichment
updated by Philip 0 • | written by BobMarleyEnrichment 0
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