Contigs Input For Phylogenetic Tree
Hello,
I want to create a nextstrain phylogenetic tree from multifastas (on bacteria strains).
The problem is my assemblies are contigs.
Is concatenate the contigs is a good (and easier) way to get the complete sequence, or I need scaffolding (and if scaffolding needed, what tool do you advise)?
Thank you very much
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davidmaimoun •
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