This is a test version of Biostars. For the public version, visit https://www.biostars.org.
CNVs annotation after CNVkit and clinical databases

Hello everyone, hope you're well. I am currently working on a CNVs analysis with CNVKit and I would like to know if there is someone who could help me on how to annotate my CNVs but also query clinical databases such as COSMIC, OncoKb, CIVIC in relation to my CNVs.

Thanks camarade !

annotation cnvs clinical_database
• 1,080 views • link
written by AIMAR • AIMAR

1 answer

AnnotSV: an integrated tool for structural variations annotation

https://academic.oup.com/bioinformatics/article/34/20/3572/4970516

https://github.com/lgmgeo/AnnotSV

maybe this tool can help you.

• 0 views • link
written by liushuailong001 • liushuailong001

Thanks very much for you help.

• 0 views • link
written by AIMAR • AIMAR

Log in to answer this question.

More posts like this