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1 vote
0 replies
846 views
News: LAST CALL - Bioinformatics Pipeline Development with Nextflow - May 19-21, 2025 (online) - Apply Now
nextflow rnaseq workshop
written by ecSeq Bioinformatics 9
0 votes
2 replies
1.1K views
RNA-seq, three comparisons - stick to one linear model, or use separate models?
statistics mixed-effect-model stats rnaseq linear-model
updated by Ram 4.5K • | written by noodlejackson 4
0 votes
1 reply
1.1K views
Using Principal Components may muddle the detecting power of a GWAS?
q-value covariates genomic-inflation pca gwas
updated by DBScan 53 • | written by Noctiluca 0
0 votes
0 replies
650 views
Use Seed or Full Alignments from Pfam HMM as a filter step
hmm sequences metagenomic
written by Jane123 0
0 votes
4 replies
1.2K views
Helicobacter pylori low-rate alignment
rna-seq transcriptomics
updated by Ram 4.5K • | written by Ariadna 2
2 votes
3 replies
12K views
Can The Wget Command Be Used To Download Pdbs
pdb
updated by Calvin 0 • | written by Harpalss 31
0 votes
3 replies
1.4K views
Is a log2 transformation an essential step in preparing expression data for machine learning?
machine-learning preproccessing microarray
updated by Ram 4.5K • | written by Sib 8
0 votes
2 replies
1.4K views
How to re-annotate the structure of gene against a known genomic file
rna-seq
updated by Mensur Dlakic 3.0K • | written by Kanoo 0
0 votes
3 replies
1.2K views
ONT Live-Basecalling Issue?
ont minknow live-basecalling
updated by namck 0 • | written by Akshay 0
0 votes
4 replies
1.2K views
Identify gene from sequence at scale in non-model organisms
sequence gene
updated by Ram 4.5K • | written by matthewmerkin32 0
0 votes
0 replies
725 views
News: Cellosaurus release 52 is available
biocuration database knowledgebase cell-line
updated by Ram 4.5K • | written by Amos Bairoch 14
0 votes
2 replies
1.4K views
WGCNA
wgcna
updated by Ram 4.5K • | written by 香 0
0 votes
0 replies
879 views
Seeking Advice on Causal Inference for Treatment Effect Prediction (Small Sample, Genomic Covariates)
causal-inference
updated by Ram 4.5K • | written by oghzzang 5
1 vote
5 replies
1.4K views
Batch effect
rnaseq batch-effect
written by Fatemeh 5
0 votes
4 replies
1.3K views
convert Gene ID to Gene Symbol
gene-id
updated by pinheirofabiano 14 • | written by majorprogeria 0
0 votes
1 reply
726 views
News: Structural bioinformatics workshop
structural-bioinformatics
updated by Ram 4.5K • | written by reetesh 0
0 votes
10 replies
1.8K views
How to test the similarity of two gene expression profiles
gene-sets
updated by Ram 4.5K • | written by htchd 2
0 votes
3 replies
1.1K views
Which are the different kinds of GeneID that exist?
r rna-seq
written by pinheirofabiano 14
0 votes
0 replies
598 views
Error using DWLS
deconvolution dwls rnaseq
written by Ana 1
0 votes
5 replies
2.5K views
How to remove this module selection error?
wgcna
updated by 香 0 • | written by gupta00aritra 0
0 votes
2 replies
2.4K views
bbsplit : How to configure ambiguous/ambiguous2 parameters in order to consider as unmapped reads, reads mapped on both human/mouse references.
bbsplit nextflow
updated by GenoMax 16K • | written by ZheFrench 60
0 votes
2 replies
1.2K views
Limma for DEG analysis
r deg limma
updated by Ram 4.5K • | written by rahma.khoualdia 0
0 votes
0 replies
632 views
deletion impact
vcf
updated by GenoMax 16K • | written by HarperReed 1
0 votes
2 replies
1.0K views
Help finding GTEx v8 file
gtex shapeit2
written by 蒲蒲 0
0 votes
5 replies
1.4K views
Idat file processing issue with command line cli
caninehts idat
written by 1769mkc 127
0 votes
0 replies
720 views
is there a way to get --ref paths to prioritize my order with vg call?
call vg vgcall
written by PolenP 1
0 votes
1 reply
894 views
Has anyone tried used simple ML models to identify virulence genes?
genetics r classifier genomics machinelearning
updated by Mensur Dlakic 3.0K • | written by Jack 0
0 votes
4 replies
1.7K views
What does vg autoindex mpmap do?
vg mpmap autoindex
written by Ziyue 0
1 vote
4 replies
2.5K views
How to keep the same view for different AlphaFold 3 simulations in ChimeraX?
chimerax alphafold 3
updated by LauferVA 497 • | written by Picasa 71
0 votes
0 replies
601 views
filtering genes before or after the correlation?
co-expression feature selection correlation
written by tyasird 1
0 votes
16 replies
3.1K views
Which tools use or rely on the XA tag in SAM/BAM/CRAM files?
cram xa compress
updated by JustinZhang 14 • | written by Maarten 0
0 votes
10 replies
3.1K views
Which additional files are needed for the -taxids option in blast?
decontamination taxids blastn
updated by GenoMax 16K • | written by WaspInSpace 0
0 votes
0 replies
1.3K views
Job: Assistant, Associate, or Full Project Scientist in Neurobiology
biology neuroscience neurobiology
written by UCSDBioSci 3
0 votes
8 replies
5.0K views
Forum: i dont know if its related to here or not but it can be very interesting discussion.
biotechnology pills pharma biology offtopic
updated by Dunois 301 • | written by suleyman 0
0 votes
3 replies
1.2K views
Is Centering and Scaling Essential for Expression Data as Input for Machine Learning Algorithms?
featureselection microarray preprocessing
written by Sib 8
0 votes
0 replies
748 views
News: Online Course: Machine learning for multi-omics integration (9–11 June)
machine-learning mult-omics
written by Physalia-courses 281
0 votes
2 replies
1.3K views
Single Nuclei RNA-Sequencing Analysis Without CellRanger
cellranger single-cell snrna-seq
written by 16_masques.vole 0
0 votes
1 reply
931 views
Demultiplexing samples when barcodes repeat: Any advice?
seurat demultiplex singlecell scrnaseq
updated by Pratik 110 • | written by tia 0
0 votes
1 reply
2.1K views
Unable to generate hierarchical and circle plot using CellChat
cellchat scrnaseq seurat
written by S 0
0 votes
8 replies
2.3K views
Discrepancy between positions on IGV and NCBI's PrimerBLAST
igv primer blast
written by Rozita 4
0 votes
2 replies
951 views
Steps for meta-analysis
meta-analysis differential-expression
updated by Ram 4.5K • | written by majorprogeria 0
4 votes
1 reply
826 views
News: The IGB team needs your help! Write a letter of support to keep the Integrated Genome Browser running!
igb integrated-genome-browser funding
updated by microfuge 197 • | written by Nowlan Freese 90
0 votes
0 replies
622 views
how pd tag were defined in gaf file
vg
written by chuanj8848 0
0 votes
4 replies
2.2K views
SRA Toolkit - three fastq files - which is which?
scrna sratoolkit
updated by GenoMax 16K • | written by Neat 0
1 vote
0 replies
26K views
Herald: The Biostar Herald for Wednesday, April 09, 2025
herald
written by Biostar 380
1 vote
6 replies
2.4K views
Methods for directional pathway analysis of DEGs?
pathway-analysis ora gsea limma
updated by Gordon Smyth 916 • | written by Steven 1
0 votes
0 replies
886 views
GTDB-tk classify_wf
gtdb-tk classification taxonomic
written by pranjalarun10 0
0 votes
1 reply
935 views
Help finding proteases that most likely cleaved a peptide from a full-length protein
r peptides proteasix
updated by Fatemeh 5 • | written by georgiamorgannn 0
0 votes
1 reply
1.5K views
ADMIXTOOLS: qp3pop fatal error (probably missing pop)
qp3pop f3test admixtools
updated by Duy 0 • | written by francesco.fontani2 0
0 votes
2 replies
1.2K views
Annotate GFA with coverage depth
vg
written by elcortegano 21
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