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0 votes
1 reply
935 views
Defining Sex Chromosomes in PLINK for a Camel Genome
plink vcf
updated by chrchang523 chrchang523 • written by Smilesky • Smilesky
0 votes
0 replies
470 views
Why is the IC50 of the low-risk group always lower than that of the high-risk group?
oncopredict
written by nuorain • nuorain
0 votes
0 replies
912 views
News: Introduction to Epigenomics course
epigenomics rna-seq atac-seq chip-seq hi-c
written by Physalia-courses Physalia-courses
0 votes
2 replies
1.1K views
Remove batch effect RnaSeq (RUVg)
ruvg batch rnaseq remove
written by aLex97 • aLex97
0 votes
0 replies
615 views
Annotation of CpG, DMRs and DMPs with MethylKit and Genomation in R
dmp methylkit dmr cpg
written by egascon • egascon
1 vote
0 replies
835 views
Tool: A rust binding for pairwise/multiple sequence aligner: bsalign-rs
bsalign alignment
written by dwpeng • dwpeng
0 votes
2 replies
960 views
Perform DEGs with pyDESeq2 in CCLE Melanoma Data But Contains Negative Values
deg ccle melanoma pydeseq2
written by mete.han.celebi • mete.han.celebi
0 votes
0 replies
413 views
energy minimisation
energy
updated by Pierre Lindenbaum Pierre Lindenbaum • written by swarnadurga66666m • swarnadurga66666m
0 votes
1 reply
745 views
How to concatenate different domains in the target database identified by hmmsearch
multiple domains hmmsearch
updated by GenoMax GenoMax • written by Yongjie Zhang Yongjie Zhang
0 votes
1 reply
740 views
How to filter Hmmsearch alignment
hmmsearch
updated by Mensur Dlakic Mensur Dlakic • written by Yongjie Zhang Yongjie Zhang
0 votes
3 replies
4.6K views
Defining residues as buried or exposed based in ASAs/RSAs
structural-bioinformatics protein-biology
updated by Dan A • Dan A • written by Agenor Neto • Agenor Neto
0 votes
1 reply
2.3K views
Understanding Re-use of Query Sequences in Long Read Alignments
alignment pacbio pbmm2 minimap2
updated by LauferVA LauferVA • written by Charles-Alexandre Roy • Charles-Alexandre Roy
0 votes
2 replies
1.3K views
Discrepancy between BAM and vcf
discrepancy vcf dragen
updated by Istvan Albert Istvan Albert • written by louis-gil • louis-gil
0 votes
1 reply
1.5K views
Question about `vg giraffe`
vg
updated by GenoMax GenoMax • written by zhengluo • zhengluo
0 votes
2 replies
1.4K views
Difference in mapping rate when aligned with mapper.pl of miReep2 and bowtie1
small-rnaseq mirnaseq bowtie mirdeep2
updated by LINHUI • LINHUI • written by MIKA • MIKA
0 votes
3 replies
1.7K views
How to align library of highly similar sequences
mpra variant alignment bwa snv
written by rustyshackleford • rustyshackleford
0 votes
3 replies
3.2K views
How to introduce normalized and scaled seurat data into monocle 3?
monocle scrna-seq seurat
updated by Bastien Hervé Bastien Hervé • written by Sun • Sun
0 votes
1 reply
871 views
Reannotation of complete bacterial genome sequence
re-annotation genome whole automated
updated by Juke34 Juke34 • written by csag6433 • csag6433
0 votes
2 replies
1.8K views
What are the best tools for quantifying allele-specific expression from bulk RNA-seq data these days?
ase phaser allele gene gatk
updated by GenoMax GenoMax • written by Paulo • Paulo
1 vote
4 replies
6.0K views
Lift over of GWAS summary stat file from Hg38 to Hg19
hg38 linux liftover gwas hg19
updated by Mllepnos • Mllepnos • written by AVA • AVA
0 votes
3 replies
1.7K views
How do I install Terminal on Windows?
terminal
updated by 5heikki 5heikki • written by phyms • phyms
0 votes
1 reply
826 views
Mapping reversion mutations
ngs reversion mutation
updated by Ram Ram • written by reddyraghuveer664 • reddyraghuveer664
2 votes
0 replies
891 views
Issue with Fetching Population Allele Frequency in gnomAD GraphQL API
allelle frequency api graphql gnomad
written by DareDevil DareDevil
0 votes
1 reply
1.3K views
Attempts to demultiplex long reads from .pod5 result in unclassified reads
dorado sequencing long-read demultiplex
updated by GenoMax GenoMax • written by Placeholder@12654926 • Placeholder@12654926
0 votes
1 reply
869 views
Issue with BSgenomeForge::forgeBSgenomeDataPkgFromNCBI
r bsgenomeforge bsgenome ncbi
updated by ATpoint ATpoint • written by noodle noodle
0 votes
1 reply
724 views
Batch effect or biological difference
batch-effect
updated by Ram Ram • written by cynthier • cynthier
1 vote
2 replies
1.1K views
Inconsistency between VCF and HGVS
vep
written by Senanu • Senanu
0 votes
1 reply
1.0K views
VCFtools + easySFS snp # discordance
radtags vcftools
updated by Istvan Albert Istvan Albert • written by laurasachica7 • laurasachica7
0 votes
4 replies
4.2K views
Generating Multiple Alignment Format file (Maf)
maf multiple-alignment mafft
updated by Ram Ram • written by roz_safavi • roz_safavi
0 votes
6 replies
1.8K views
STAR: Paired alignment gets ~18% unmapped (too short), but single reads get >90% mapping
paired-end star rnaseq
written by Davor • Davor
1 vote
0 replies
1.7K views
Job: bioinformatician position, Ohio State University, Columbus, USA
bioinformatician
updated by GenoMax GenoMax • written by ilaria.palmisano • ilaria.palmisano
0 votes
4 replies
1.4K views
Coverage drop at assembly ends
bowtie2 bw-mem alignment minimap2
updated by GenoMax GenoMax • written by alenew.am • alenew.am
0 votes
7 replies
2.2K views
How to identify additional SNPs on EPICv2
snps methylation epic
updated by Papyrus Papyrus • written by Basti • Basti
0 votes
1 reply
814 views
jcvi:ValueError: A total of 0 anchor was found. Aborted.
jcvi collinearity
updated by Ram Ram • written by JieQY • JieQY
0 votes
5 replies
1.9K views
SNPcheck alternative
snpcheck
updated by GenoMax GenoMax • written by KirGen • KirGen
0 votes
0 replies
617 views
Comparing HMMER vs. HHrepID for LRR Repeat Detection and Boundary Consistency
hmmer repeats
written by jllPons • jllPons
0 votes
0 replies
677 views
circos plot help
visualization snv genomics circos
updated by Ram Ram • written by Genomancer • Genomancer
0 votes
3 replies
1.2K views
DAVID List Upload/Gene Conversion Tool
david
updated by Ram Ram • written by b5708137 • b5708137
0 votes
2 replies
1.4K views
Can I combine segment results from Sequenza and cnvkit?
cnv sequenza cnvkit
written by Ram Ram
0 votes
8 replies
2.1K views
Shotgun dataset with polyG, low qualiity
shotgun-data
written by shevch2009 • shevch2009
0 votes
2 replies
1.0K views
MAGeCK: Doing two sided test on gene level?
mageck
written by gernophil • gernophil
0 votes
5 replies
1.4K views
Is TETranscripts useful for repetitive sequences analysis?
tetranscripts
updated by Michael Dondrup Michael Dondrup • written by frarodmar17 • frarodmar17
0 votes
5 replies
1.8K views
SlingShot and Subsetting data
scrna slingshot trajectory
updated by jared.andrews07 jared.andrews07 • written by carolofharvest • carolofharvest
0 votes
1 reply
1.1K views
Bulk searching UniProt
uniprot
updated by Elisabeth Gasteiger Elisabeth Gasteiger • written by timothy.kirkwood • timothy.kirkwood
0 votes
6 replies
2.0K views
Problem with Accession Number Changes in UniProt FASTA Sequences
fasta accession uniprot idmapping
written by bioinfo_enthusiast • bioinfo_enthusiast
0 votes
2 replies
1.1K views
PPI Network Analysis of Virulence Genes in Morganella morganii Using STRING Database
ppi string
written by bioinfo_enthusiast • bioinfo_enthusiast
2 votes
12 replies
3.1K views
Forum: Reproducibility Crisis
r-bioinformatics
updated by i.sudbery i.sudbery • written by ParastooA • ParastooA
0 votes
13 replies
13K views
Getting sample information from GEO
geo ncbi
updated by DareDevil DareDevil • written by Tom_L Tom_L
0 votes
3 replies
1.0K views
How to Close a Phage Genome? Issues with PhageTerm and CheckV Completeness
phage genome assembly phageterm
updated by GenoMax GenoMax • written by mail2steff mail2steff
0 votes
2 replies
1.2K views
RepBase30.02.fasta.tar.gz
repbase30.02.fasta.tar.gz offtopic
updated by Michael Dondrup Michael Dondrup • written by jupitoy • jupitoy
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