Detection SNPs and Indels Bacteria
Hi,
I'm new to bioinformatics and genomic analysis. I'd like to ask what tools I can use to detect SNPS and indels in multiple bacterial genomes, and what possible databases I could use to assess the relevance of the findings.
Thank you very much.
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Istvan Albert
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Eltercertopico •
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Eltercertopico •
1 answer
The breseq pipeline is a good start
https://barricklab.org/twiki/bin/view/Lab/ToolsBacterialGenomeResequencing
other alternatives exist.
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