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0 votes
2 replies
9.0K views
Structural Variant identification on pangenome graphs
sv variant structural graph genome
written by Panos 191
3 votes
17 replies
42K views
Conversion of Gene Name to Ensembl ID
gene rna-seq r genome
updated by Thanujay S 0 • | written by bazok 4
0 votes
4 replies
9.3K views
Is this PCA plot correct??
pca
updated by GenoMax 16K • | written by m00nphany 0
0 votes
2 replies
6.9K views
Forum: Splice junctions plots for long-read seq data
splice-junctions alternative-splicing long-read-sequencing
written by alison.ludzki 0
0 votes
0 replies
5.8K views
News: Introduction to Nextflow course - online, 10–12 November
pipeline ngsdata nextflow reproducibility workflow-manager
written by Physalia-courses 281
4 votes
22 replies
38K views
Converting Ensembl Gene Ids To Hgnc Gene Name / Coordinates
ensembl ucsc genome mapping coordinates
updated by Thanujay S 0 • | written by Ryan D 338
0 votes
4 replies
7.8K views
How to debug faulty BBmap clumpify command?
bbmap fastq trimming genome
written by marongiu.luigi 79
0 votes
2 replies
7.2K views
Fastq reads to csv - How can I make a csv with the read number of several fastq files in the same folder?
illumina csv read fastq count
updated by GenoMax 16K • | written by alx.alo 0
1 vote
3 replies
6.9K views
Mapping amplicon to a reference sequence with iteration / elongation
barcoding ngs mapping
updated by mmahe 0 • | written by marion.couedel 1
0 votes
1 reply
6.2K views
MERLIN haplotyping
merlin
updated by Prashant 0 • | written by smb2174 2
0 votes
1 reply
7.4K views
dbSNP VCF file compatible with GRch38.p14
vcf samtools
updated by GenoMax 16K • | written by Kelly 0
0 votes
0 replies
6.1K views
News: Single-Cell RNA-Seq Analysis
rna-seq single cell
updated by GenoMax 16K • | written by oliverhooker 14
0 votes
0 replies
5.6K views
News: Introduction to Snakemake
snakemake
updated by GenoMax 16K • | written by oliverhooker 14
0 votes
0 replies
5.5K views
News: course - Introduction to Deep Learning for Biologists -Online, 3–7 November
machinelearning python convolutionalneuralnetwork deeplearning
written by Physalia-courses 281
1 vote
6 replies
12K views
Is total miRNA in EV constant? Implications for library size normalization.
rna-seq
updated by Gordon Smyth 916 • | written by Thomas.H.Hampton 1
1 vote
0 replies
5.2K views
Tool: evorca: fast and minimal plmDCA in JAX
jax python protein-contact-prediction bioinformatics plmdca
written by Shosuke 1
0 votes
9 replies
8.7K views
How to load sam.gz files on IGV?
visualization genome igv mapping
updated by GenoMax 16K • | written by marongiu.luigi 79
0 votes
3 replies
7.0K views
Where to find known sites for mm39 used by GATK4 BaseRecalibrator?
baserecalibrator mouse gatk
updated by iamsmor 0 • | written by 乙 24
0 votes
2 replies
7.4K views
50K genomes to gene alignment
genomics pirate roary
updated by michael.ante 408 • | written by Madde 2
0 votes
1 reply
7.7K views
Seurat - Warning after rescaling a subset of the data
findvaraiblefeatures r seurat
updated by Bastien Hervé 680 • | written by Assa Yeroslaviz 197
0 votes
1 reply
7.0K views
DotPlot / VlnPlot Seurat
scrna-seq significance-testing test seurat
updated by Bastien Hervé 680 • | written by npont 3
0 votes
4 replies
7.3K views
Forum: Is there a need for a new Protein/Molecule viewer library?
protein viewer
written by Elbbard 0
0 votes
11 replies
14K views
Regarding the usage of raw vs filtered bc matrices
10x ranger cell snrnaseq
updated by dsull 781 • | written by biotrekker 11
0 votes
5 replies
7.9K views
Tutorial: Parallel AUGUSTUS Execution via GNU Parallel
augustus genome ngs parallel
updated by Meiers 0 • | written by Vijith 10
0 votes
0 replies
5.7K views
News: Assembling Genomes with Oxford Nanopore – A Hands-On Guide (Online course, 29 September – 3 October)
genomeassembly nanopore longreads
written by Physalia-courses 281
1 vote
3 replies
7.4K views
Calculation variant frequencies for copy number events for a cohort
cnv vcf variant frequency
written by barslmn 245
1 vote
2 replies
8.7K views
Custom Selection of GO Terms or Pathways in EnrichR Output
enrichr ggplot2 r python rna-seq
written by mohammedtoufiq91 27
2 votes
3 replies
7.0K views
Seurat not creating nCount_RNA and nFeature_RNA
seurat rstudio
updated by bczvx1004 0 • | written by Nicholas 2
0 votes
1 reply
5.8K views
Cibersortx server down?
cibersortx
updated by GenoMax 16K • | written by Sam 0
0 votes
1 reply
6.0K views
Available signature matrix for deconvoluting my bulk data using CIBERSORTX
bulk seq snrna deconvolution cibersortx
updated by Sam 0 • | written by rajdeepboral00 7
0 votes
6 replies
8.5K views
[vg giraffe] Unable to add read group to BAM file
vg
updated by anovak 18 • | written by saruman 1
0 votes
11 replies
11K views
CIBERSORTx error: 'x' must be an array of at least two dimensions
signature cibersortx matrix
updated by ATpoint 9.1K • | written by Jie 0
1 vote
11 replies
12K views
ATAC-seq fragment size distribution - huge spike at 150 bp
atac-seq
updated by yuntan1992 0 • | written by Simon 1
0 votes
15 replies
12K views
Tools for raw reads that estimate the percentage of reads that hit marker genes using protein BLAST or more advanced approaches based on protein HMM profiles of marker PFAM domains
data raw reads shotgun
written by shevch2009 2
0 votes
5 replies
8.3K views
RNAseq requirements: Biological and Technical replicates
rna-seq
updated by jkim 25 • | written by Rim 0
0 votes
2 replies
6.3K views
How to connect the UCSC when i get the DMR.plot?
dna methylation dmr
written by Wren 0
0 votes
7 replies
11K views
how to start
clarity
updated by patrickdm 26 • | written by raychmuthoni 0
0 votes
4 replies
7.9K views
News: Feedback needed on new user-friendly BED file tool
bedtools bed
updated by ATpoint 9.1K • | written by nadia 0
2 votes
1 reply
5.4K views
BedToIntervalList (Picard) and IntervalListTools (Picard)
variant rna-seq picard calling gatk
updated by Pierre Lindenbaum 17K • | written by Beyza 2
0 votes
0 replies
5.7K views
News: Workshop:Virtual Genome Assembly, Sept. 16-18, 2025
virtual workshop uconn genomeassembly
written by zsc25001 1
0 votes
3 replies
7.9K views
HIV virus - GTF annonation
hiv
updated by Ales 10 • | written by maxdlf12 0
0 votes
0 replies
5.7K views
Job: Tenure Track Professor of Translational Bioinformatics and Precision Medicine
bioinformatics liquid-biopsy computational-biology
written by klaus.wagner 0
1 vote
11 replies
13K views
HIV : gtf or gff annotation
gtf annotation hiv gff
updated by xiaoleiusc 14 • | written by Nicolas Rosewick 1.1K
1 vote
1 reply
6.3K views
DESeq2 time-series - full model matrix is less than full rank
full-rank design deseq2 time-series
updated by swbarnes2 1.5K • | written by gogeni5529 9
0 votes
1 reply
5.9K views
Removing PCR duplicates in gam file
giraffe vg
updated by colindaven 844 • | written by gulin201909 0
0 votes
0 replies
5.5K views
Job: 2-year postdoc is now available at my lab in Lund, Sweden, in AI and Forensics
postdoc forensics crime ai
written by eranelhaik 3
1 vote
3 replies
6.9K views
RNAseq edgeR :considering interaction is needed?
edger interaction rnaseq
updated by SamGG 15 • | written by tesler 1
0 votes
16 replies
15K views
Parabricks : Number of GPUs requested (2) is more than number of GPUs (0) in the system., exiting.
haplotypecaller parabricks gpu
written by Pierre Lindenbaum 17K
0 votes
3 replies
9.0K views
CDS prediction for newly assembled transcripts
rna-seq transcriptome assembly cds
updated by Ales 10 • | written by I0110 16
0 votes
2 replies
8.2K views
Gene feature information missing in Stringtie merged assembly
rna-seq assembly gtf
updated by Ales 10 • | written by waqaskhokhar999 16
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