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1 vote
7 replies
12K views
how to download gene annotation for NCBI GENE ID
r entrez ncbi
updated by josev.die • josev.die • written by Bioinfonext Bioinfonext
0 votes
0 replies
11K views
News: Genome Assembly using long-reads PacBio data
hic longreads genomeassembly pacbio
written by Physalia-courses Physalia-courses
1 vote
2 replies
11K views
Taxonomic classification of shotgun metagenomic data of rhizospheric soil (bacteria + fungi)
shotgun classification taxonomic metagenomics
written by sumah.1si21bt017 • sumah.1si21bt017
0 votes
2 replies
10K views
I encountered an error while using R Diffbind for data analysis
diffbind r
written by Pallondyle • Pallondyle
0 votes
1 reply
7.9K views
Single cell multiomics data i.e, sc(RNA+ATAC) seq data tar file
single omics cell multi
updated by ATpoint ATpoint • written by Rupanjali • Rupanjali
1 vote
4 replies
8.5K views
Rust-HTSlib Script Only Outputs BAM Header, Records Are Missing
rust bam rust_htslib
written by plusone • plusone
2 votes
2 replies
7.3K views
galaxy and RNA seq
seq rna
written by nmozdoori • nmozdoori
0 votes
0 replies
6.5K views
DIABLO Multi-omics Integration
how results interpret diablo to
updated by GenoMax GenoMax • written by Haya • Haya
0 votes
1 reply
7.9K views
Which metric is best to represent cell-level counts/features in Seurat: raw/log-normalized (nCount_RNA/nFeature_RNA) or SCTransform (nCount_SCT/nFeature_SCT)?
r visualization
updated by ATpoint ATpoint • written by solo.albif • solo.albif
0 votes
2 replies
6.6K views
Job: Help with bioinformatics/genetics content of my CV
terminology cv
updated by Anchal • Anchal • written by mairena.hirschberg • mairena.hirschberg
0 votes
3 replies
4.2K views
Where can I get Human microbiome dataset
microbiome human data
updated by Arup Ghosh Arup Ghosh • written by Emily • Emily
0 votes
15 replies
8.8K views
chimeraTE GTF format error
chimerate
updated by lieven.sterck lieven.sterck • written by frarodmar17 • frarodmar17
0 votes
6 replies
3.6K views
Estimating copy number of heterologous genes from WGS data in Yarrowia lipolytica
wgs cnvs copy-number
updated by colindaven colindaven • written by Giorgia • Giorgia
0 votes
0 replies
3.2K views
News: online course (4th edition): Structural Variant Detection & Comparison
longreads nanopore pacbio structuralvariations
written by Physalia-courses Physalia-courses
1 vote
0 replies
3.1K views
News: Cellosaurus release 53 + new SPARQL/RDF functionalities
database biocuration line knowledgebase cell
written by Amos Bairoch • Amos Bairoch
0 votes
2 replies
3.2K views
Relative viral load estimation from NGS data – is it possible?
virology
updated by Mark Mark • written by omicon • omicon
0 votes
1 reply
2.8K views
primer
primer
updated by GenoMax GenoMax • written by elahe • elahe
0 votes
1 reply
3.5K views
Help installing and running PITA & PicTar for miRNA target prediction
microrna pita pictar
updated by Arup Ghosh Arup Ghosh • written by Andie • Andie
0 votes
3 replies
3.4K views
Splitting VCF using phase information
phasing bcftools vcf
updated by cmdcolin cmdcolin • written by Kyra • Kyra
0 votes
0 replies
2.9K views
Generating VCF file from Illumina MEGA array
strand vcf snp illumina microarray
written by 112233 • 112233
0 votes
2 replies
2.8K views
High discrepancy between mutation frequency values
mf af gnomad tcga
written by Ana • Ana
2 votes
5 replies
3.4K views
How to troubleshoot strange hyperparameter trace from BSLMM (GEMMA)
gemma gwas bslmm
written by gina.maria • gina.maria
0 votes
1 reply
2.4K views
Mean count in DESeq
in deseq count mean
updated by GenoMax GenoMax • written by prerna • prerna
1 vote
11 replies
4.8K views
is there publicly available tool for assembly of bionano data
om bionano assembly alignment
written by eebloom • eebloom
0 votes
4 replies
9.7K views
Any bacterial databases that contain Gram staining information?
gram-positive gram-negative
updated by scyteklabo • scyteklabo • written by archaeopteryx • archaeopteryx
0 votes
1 reply
2.8K views
detectRUNS R package error
mapping detectruns r roh homozygosity
updated by Miika • Miika • written by Roisin Marie • Roisin Marie
3 votes
1 reply
2.4K views
Visualisation of big insertions by using Illumina emedgene
emedgene
updated by GenoMax GenoMax • written by Nina • Nina
0 votes
5 replies
2.8K views
Integrity of bam files
integrity ran-seq bam samtools
written by SHN • SHN
0 votes
0 replies
2.7K views
News: Course: RNA Sequencing Data with R/Bioconductor - online, 3–14 November
rnaseq differentialexpressionanalysis r bioconductor
written by Physalia-courses Physalia-courses
0 votes
2 replies
3.4K views
Clumping- cannot mtfrm
clumping mr
updated by Onyeubani • Onyeubani • written by sp • sp
0 votes
2 replies
2.0K views
What is the best practice for scRNAseq analysis of multiple samples?
scrnaseq seurat single cell
written by Tundup • Tundup
0 votes
0 replies
1.8K views
Forum: Trying to get into Drug Design & Molecular Docking
docking biochemistry ligands
updated by Ram Ram • written by Shreyas • Shreyas
0 votes
3 replies
2.0K views
DESeq2 - Changing the order of counts / metadata
counts metadata deseq2
written by himanshu0102 • himanshu0102
3 votes
7 replies
4.2K views
Marker genes of hematopoietic stem cells for cluster annotation in single-cell analysis
single-cell cluster-annotation hsc marker-gene
updated by ATpoint ATpoint • written by Ribo • Ribo
0 votes
1 reply
1.9K views
Problem with Dfam-Database and the RepeatClassifier function of repeat modeler
dfam repeat-annotation te-database repeat-masking repeatmodeller
updated by GenoMax GenoMax • written by WaspInSpace • WaspInSpace
0 votes
1 reply
1.0K views
Construction of a pangenome using multiple genome sequences and read data
vg
updated by colindaven colindaven • written by shcho • shcho
0 votes
1 reply
852 views
Leafcutter installation issue
leafcutter conda devtools
updated by michael.ante michael.ante • written by jyotik • jyotik
1 vote
0 replies
954 views
How to interpret and filter vg call output VCF
graph genotyping pangenome vg vcf
written by Tobias • Tobias
0 votes
1 reply
987 views
Transcriptome splicing analysis tools
rna-sequencing splicing
updated by Ram Ram • written by Morris_Chair Morris_Chair
0 votes
2 replies
1.1K views
running featureCounts on multiple bam files
rnaseq r
updated by Ram Ram • written by Mamta • Mamta
0 votes
3 replies
1.2K views
Creating sliding window for methylation data
wgbs methylation
updated by Alex Reynolds Alex Reynolds • written by ty.fu • ty.fu
0 votes
0 replies
750 views
Running time of determining graph multiplicity in unicycler
hydrid genome unicycler assembly
written by 德水 • 德水
0 votes
1 reply
1.4K views
How to get REF/ALT allele for a list of rsid and SNP notations
bed r variant vcf snp
updated by GenoMax GenoMax • written by Meisam • Meisam
0 votes
2 replies
1.1K views
CTCF binding sites
genome gencode annotations
written by pt.taklifi pt.taklifi
0 votes
0 replies
1.1K views
News: Workshop: Virtual RNA-seq (de novo), August 19–21
workshop rnaseq uconn
written by zsc25001 • zsc25001
0 votes
4 replies
1.3K views
Only 35 out of 800 genes in STAR reference assembly
rnaseq transcriptomics rna_seq star rna_sequencing
written by Jasper • Jasper
0 votes
8 replies
2.5K views
Efficiently Converting CD-HIT-EST Clusters into .fasta Files
python msa clustering cd-hit
updated by Joe Joe • written by mtsrn • mtsrn
0 votes
0 replies
821 views
Concatenation of adata and losing .var
single seq cell rna scanpy
written by bioinfo • bioinfo
0 votes
0 replies
909 views
Integrating and annotating multiple samples of single cell ATAC data
signac seurat scatac
written by AB AB
0 votes
2 replies
3.2K views
combine hifiasm and hifiasm-ont assemblies.
wgs ngs genomics sequencing
updated by shelkmike shelkmike • written by Mark • Mark
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