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0 votes
3 replies
8.1K views
Criteria for choosing variants
variant rnaseq
written by ramiro.barrantes 6
1 vote
5 replies
10K views
How to fix "Please indicate the file directory in 'setting' file?" for MaxBin2?
maxbin2 binning metagenomics
updated by GenoMax 16K • | written by O.rka 75
0 votes
4 replies
8.0K views
Tutorial: Perform Hierarchical Clustering in R with ggdendro Visualization
statistics hierarchical_clustering ggdendro r
written by Jeremy 94
2 votes
3 replies
5.5K views
Difficulty Imputing Missing SNPs for Haplotype Construction in PyPGx
pypgx haplotype imputation beagle genotyping
updated by Aleksandra 19 • | written by Andresa Capodifoglio 4
2 votes
1 reply
6.1K views
CBioPortal: What does Mutation type: Targeted_Region means?
cbioportal variants cancer oncokb
updated by Aleksandra 19 • | written by Frans 2
0 votes
0 replies
4.7K views
News: Machine Learning for Multi-Omics Integration – University of Barcelona, 15–17 December
dataintegration machine-learning mult-omics singlecellrnaseq
written by Physalia-courses 281
0 votes
10 replies
9.2K views
Calling star alleles with PGx-POP on my VCF file
vcf alleles pgx-pop star
updated by Andresa Capodifoglio 4 • | written by Vanish007 5
0 votes
1 reply
4.7K views
Query Regarding NGS Analysis with TruSeq UMI Adapters
twist
updated by GenoMax 16K • | written by 1769mkc 127
0 votes
4 replies
5.3K views
Learning Bioinformatics doing Projects
bioinfo projects offtopic
written by Anjali 0
1 vote
15 replies
10K views
High percentage of intronic/intergenic reads in RNA-seq
rna-seq
updated by i.sudbery 2.3K • | written by lluc.cabus 4
0 votes
0 replies
4.5K views
Job: Assistant Professor in Genomics (Colgate University)
genomics assistant-professor
updated by Ram 4.5K • | written by Ahmet 0
0 votes
6 replies
5.2K views
deeparg-takes-too-many-threads
shotgun deeparg raw reads
updated by Dave Carlson 223 • | written by shevch2009 2
0 votes
2 replies
4.9K views
When to merge RNA-seq files with multiple sequencing lanes
rna-seq deseq2 trinity cd-hit goseq
updated by GenoMax 16K • | written by Olivia 0
0 votes
1 reply
4.2K views
Regress out covariate in boxplot
ggplot2
updated by LChart 518 • | written by Nona 9
0 votes
1 reply
4.4K views
DESeq2 design: longitudinal two timepoint study with treatment effect
longitudinal treatment deseq2 effect
updated by LChart 518 • | written by jonstug 0
4 votes
0 replies
16K views
Herald: The Biostar Herald for Tuesday, September 02, 2025
herald
written by Biostar 380
1 vote
6 replies
8.1K views
protein interaction prediction
protein interaction
written by Fatemeh 5
0 votes
7 replies
5.7K views
Add reference genomes as an outgroup to a phylogenetic tree
phylogenetic tree
updated by Michael Dondrup 5.6K • | written by Álvaro 0
0 votes
2 replies
13K views
News: FINAL CALL: In-Person Single-Cell RNA-Seq Data Analysis Workshop (October 6-8 in Berlin)
scrnaseq singlecell transcriptomics
written by ecSeq Bioinformatics 9
0 votes
0 replies
3.7K views
News: Hands-On NGS Epigenomics Data Analysis Workshop (November 3-5 in Munich, Germany)
bisulfite-seq chromatin chip-seq methylation atac-seq
written by ecSeq Bioinformatics 9
1 vote
0 replies
3.9K views
Job: Looking for mentorship and collaboration opportunities in RNA-seq machine learning (R-based)
r bayesian machine-learning rna-seq
updated by GenoMax 16K • | written by AcheampongAndy 1
0 votes
6 replies
5.2K views
Low percentage of classified reads (~18%) after Kraken2 analysis – is this expected?
kraken2 metagenomics shotgun
written by sumah.1si21bt017 3
0 votes
0 replies
3.7K views
News: online course Sex Chromosome Evolution (6–10 October)
genomics evolution sexchromosome
written by Physalia-courses 281
3 votes
4 replies
3.8K views
Are these 10x samples too low quality for downstream analysis?
single-cell scrnaseq seurat 10x
updated by songli 0 • | written by AHerik 5
0 votes
5 replies
5.2K views
Split chromosome into smaller fragments to save memory when build xg and gcsa index.
vg
updated by Jordan M Eizenga 78 • | written by 李经纬 0
2 votes
2 replies
3.8K views
Universal Human Reference RNA Sample
rna
updated by michael.j.apostolides 8 • | written by kstangline 11
0 votes
2 replies
3.1K views
Question about substitution of KEGG
annotation kegg functional gene
written by dxh0222 1
0 votes
1 reply
3.0K views
Length of 'dimnames' [1] not equal to array extent
singlecellexperiment
written by fra.r.silvestro 1
0 votes
1 reply
2.9K views
Deeptools PlotProfile
computematrix deeptool heatmap chip-seq bamcoverage
updated by ATpoint 9.1K • | written by Irene 1
0 votes
0 replies
2.7K views
News: online course: Species occurrence data: download and cleaning with R
data-cleaning biodiversity species-ocurrence
written by Transmitting Science communication 7
0 votes
3 replies
3.2K views
Local Synteny Analysis with Uncharacterized Genes
synteny
updated by Joe 2.2K • | written by snaledale 0
0 votes
3 replies
3.3K views
Help with metagenomics viral
sequencing genomic metagenomic virology virus
updated by dr_cfoster 125 • | written by CECEL 0
0 votes
3 replies
3.0K views
mummer4: how do I get the mapview executable?
mummer mapview
updated by GenoMax 16K • | written by Tospohh 1
0 votes
4 replies
3.5K views
RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
rtg vcf genomic cancer
written by stuckinanendlessfebruary 1
0 votes
0 replies
2.7K views
News: online course: R/Bioconductor for Mass Spectrometry and Proteomics
r mass-spectrometry proteomics bioconductor
written by Physalia-courses 281
0 votes
5 replies
3.1K views
How to obtain a refFlat file for the Rat
refflat_file rat
updated by GenoMax 16K • | written by AIMAR 7
0 votes
0 replies
2.5K views
News: Course: Single-cell analysis with R/Bioconductor
singlecellexperiment singlecellworkflow singlecell singlecelldata
written by ludwig.geistlinger 2
0 votes
4 replies
3.8K views
Is a direct comparison of the number of up- and down-regulated genes meaningful?
rna-seq
updated by kalavattam 85 • | written by biock 7
0 votes
0 replies
2.4K views
How to convert demultiplexed Fastq to PRGs if Adaptor and Barcode information is not provided?
pipesnake paleomix uce fastq
written by s.pal2 0
0 votes
2 replies
4.6K views
CUT&Tag signal normalization for generating bigWig files
cut-tag bigwig normalization
updated by ATpoint 9.1K • | written by luminea 2
1 vote
2 replies
4.4K views
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
rnaseq replicates deseq2 edger
written by DareDevil 448
0 votes
2 replies
1.9K views
How to detect divergent domains in AlphaFold models (CDD/InterProscan not working, PyMOL alignment)
alphafold structural-analysis domain-prediction pymol
written by LLG 0
0 votes
3 replies
1.8K views
combat_met error: mu_hat_mat[, batches_ind[[jj]]] : subscript out of bounds
combat_met epigenetics
updated by JmWangBio 0 • | written by ramiro.barrantes 6
0 votes
3 replies
2.6K views
dual-RNA seq combined reference alignment and quantification.
exon dualrnaseq quantification annotation cds
updated by GenoMax 16K • | written by ki 0
0 votes
2 replies
5.6K views
Illumina and ONT reads comparison
assembly ont genome illumina hybrid-assembly
updated by colindaven 844 • | written by magatam 0
0 votes
2 replies
7.3K views
Motif analysis
jaspar motif meme homer analysis
updated by lieven.sterck 1.6K • | written by sk_24 0
0 votes
2 replies
6.5K views
Dragon Motif Builder download link
motif dragon builder discovery
updated by colindaven 844 • | written by Amara 0
0 votes
0 replies
5.0K views
News: online course: Host and manage your R projects with Git & GitHub
git github r-projects
written by Transmitting Science communication 7
0 votes
4 replies
14K views
Asking for unmapped genes in RNA sequencing via Galaxy
galaxy
written by Atefeh 0
0 votes
2 replies
12K views
RNA-Seq - Strand-specific coverage for a paired library
bowtie2 bam rna-seq alignment
updated by swbarnes2 1.5K • | written by npb27 2
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