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0 votes
4 replies
1.6K views
Domains of protein
domains protein fasta
updated by roadmap34 • roadmap34 • written by brunofelicianodeomena • brunofelicianodeomena
0 votes
1 reply
885 views
CYTOHUBA QUESTION (cluepedia)
cytoscape cluepedia network
updated by churas.camera • churas.camera • written by hwangseok1025 • hwangseok1025
0 votes
3 replies
1.6K views
snpEff custom database not found
docker snpeff
updated by Arup Ghosh Arup Ghosh • written by sg197 • sg197
0 votes
3 replies
1.1K views
How to determine phix read in undermined fastq files
demultiplexing
updated by GenoMax GenoMax • written by 1769mkc 1769mkc
0 votes
2 replies
1.6K views
Job: Job search for Data Engineer role
engineer data
updated by Matthias Zepper Matthias Zepper • written by itparanoia • itparanoia
0 votes
6 replies
1.8K views
nanopore long sequencing DNA data data basecalling using EPI2ME ,NEXTFLOW and singualrity in cluster env have error : ERROR ~ Error executing process > 'getParams' Caused by: Process `getParams` te
basecalling
written by reziyamaimaiti0331 • reziyamaimaiti0331
0 votes
4 replies
1.3K views
Nextflow STAR alignment process only aligning one fastq file when 6 are being passed in
nextflow rna-seq
written by smarcotte11 • smarcotte11
0 votes
0 replies
1.1K views
News: online course: Single-cell RNA-seq Analysis with R/Bioconductor
bioconductor single-cell-rnaseq
written by Physalia-courses Physalia-courses
0 votes
0 replies
778 views
How to Generate PacBio HiFi Reads with Ground Truth Using PBSIM3?
pacbio pbsim pbsim3
written by DBPZ • DBPZ
0 votes
0 replies
1.2K views
News: Online course: Bioinformatic Analysis of Transposable Elements
transcriptomics transposableelements manualcuration genomeassembly
written by Physalia-courses Physalia-courses
0 votes
4 replies
1.6K views
"No space left on device" error when making DIAMOND database, alternative download method?
database diamond
updated by Mensur Dlakic Mensur Dlakic • written by pahurkar.arjun • pahurkar.arjun
0 votes
3 replies
1.3K views
Uninformative Cluster in scRNAseq
scrnaseq qc doublets
updated by Arup Ghosh Arup Ghosh • written by karlensberg • karlensberg
0 votes
2 replies
1.1K views
How to retrieve metadata for multiple genbank records
metadata genbank
written by SushiRoll • SushiRoll
1 vote
5 replies
2.2K views
Best practice to merge per sample variant calls from personalized pangenomes
graph vcf haplotype-sampling vg personalized-pangenome
updated by GenoMax GenoMax • written by Tobias • Tobias
0 votes
2 replies
1.3K views
Why does the number of sequences increase after using Hi-C to mount chromosomes?
yahs hifiasm assembly hi-c gene
updated by shelkmike shelkmike • written by xinguok794 • xinguok794
0 votes
3 replies
1.0K views
Difficulties with assembly
megahit eukaryote assembly
updated by shelkmike shelkmike • written by Mokammel Hossain • Mokammel Hossain
0 votes
2 replies
1.0K views
Seurat DimPlot generates a weird data frame together with the scatter plot
r seurat
written by solo.albif • solo.albif
1 vote
5 replies
5.8K views
How to download intronic positions from Ensembl
genome ensembl
updated by peterdion • peterdion • written by Ati • Ati
0 votes
11 replies
2.2K views
Current size of blast nr database as FASTA file
fasta blast
updated by lieven.sterck lieven.sterck • written by pahurkar.arjun • pahurkar.arjun
0 votes
5 replies
1.5K views
SRA FTP Upload Issue
ftp sra ncbi
updated by Jesse • Jesse • written by saamhasan55 • saamhasan55
2 votes
4 replies
1.3K views
How to calculate total and average read counts from paired-end and singleton FASTQ files?
metagenomics
updated by GenoMax GenoMax • written by Sachin • Sachin
0 votes
1 reply
689 views
New computer purchase
linux
updated by GenoMax GenoMax • written by Edward • Edward
0 votes
0 replies
1.2K views
News: Python for Biological Data Exploration & Visualization (PYBD01)
python
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
0 replies
1.1K views
News: Introduction to Machine Learning (IMLR04)
learning r machine
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
2 replies
1.0K views
When absolute protein quantification isn't possible, what anaylses work on ranked expression?
dia-ms proteomics
updated by Ram Ram • written by Ali • Ali
0 votes
0 replies
660 views
lncRNA and mRNA correlation analysis results
correlation lncrna ncrna coexpression mrna
written by Zeynep • Zeynep
0 votes
2 replies
2.2K views
Scanpy Dotplot / Matplotlib Help
matplotlib dotplot python scanpy
written by cthangav • cthangav
0 votes
2 replies
1.4K views
Help regarding quality control of 10X run?
10x nuclei qc scnuc
updated by jared.andrews07 jared.andrews07 • written by Pratik Pratik
0 votes
1 reply
1.0K views
PLINK 1.9 and ADMIXTURE 1.3.0 Help with renaming
admixture error plink debugging coding
updated by Corentin Corentin • written by Jens • Jens
0 votes
0 replies
569 views
salmon alevin multimapping reads/ tier3 genes
salmon alevin
written by nmannda148 • nmannda148
0 votes
3 replies
1.3K views
How can I confidently determine if my genome sequence Is truly Anaplasma marginale?
anaplasma genomics marginale omics
updated by Ram Ram • written by ashiqullah024 • ashiqullah024
0 votes
13 replies
3.7K views
Trouble with Standalone Blast Tool (running for 2 hours and no output)
genome fasta blastx blast
updated by Ram Ram • written by pahurkar.arjun • pahurkar.arjun
0 votes
0 replies
818 views
Forum: Seeking unique bioinformatics angle for wildlife-livestock AMR gut microbiome study (PhD proposal help)
antimicrobial-resistance metagenomics microbiome amr
updated by Ram Ram • written by Saeed • Saeed
0 votes
6 replies
1.7K views
Running Arriba on galaxy
galaxy
written by Abdelrahman • Abdelrahman
0 votes
4 replies
1.5K views
how to extract centromeric regions from human assemblies/FASTA
centromeres fasta
updated by colindaven colindaven • written by Matteo Ungaro • Matteo Ungaro
0 votes
1 reply
761 views
Changes cgMLST type of Neisseria gonorrhoeae
cgmlst neisseria gonorrhoeae
updated by GenoMax GenoMax • written by nahid.islam.zahid • nahid.islam.zahid
0 votes
0 replies
694 views
Appropiate normalization method for OTU table built from MAGs abundances estimations?
mag normalization otus metagenomics
written by v.berriosfarias • v.berriosfarias
0 votes
1 reply
760 views
scRNA-seq annotation with Revsc
epithelialcells intestinal revivalstemcell
updated by Arup Ghosh Arup Ghosh • written by Farha • Farha
1 vote
3 replies
1.1K views
dbSNP: left-shift vs right-shift of indels
dbsnp
updated by GenoMax GenoMax • written by Matthew • Matthew
0 votes
3 replies
931 views
duplicate reads in RNAseq datasets
rnaseq r
updated by dsull dsull • written by Bioinfonext Bioinfonext
0 votes
0 replies
779 views
Tools to model DEG/pathways in (fast-dividing) CANCER cell lines across timepoints? (in bulk RNA-seq)
deg rna-seq bulk
written by txema.heredia • txema.heredia
3 votes
5 replies
8.0K views
Combine a directory of GVCF files with gatk CombineGVCFs
gatk combinegvcfs gvcf
updated by DareDevil DareDevil • written by michael.flower.14 • michael.flower.14
0 votes
4 replies
1.8K views
UMI introduction and deduplication with SMARTer-Seq
rnaseq sequencing umi rna
updated by i.sudbery i.sudbery • written by rayanelkholdi • rayanelkholdi
0 votes
0 replies
1.1K views
News: AI for Genomics: From CNNs and LSTMs to Transformers (Online, 9–11 September)
deeplearning lstms ai cnns machinelearning
written by Physalia-courses Physalia-courses
0 votes
1 reply
882 views
AMRFinderPlus input fasta file for clinical isolates
amrfinder
updated by GenoMax GenoMax • written by Adriana • Adriana
0 votes
1 reply
724 views
Merged seurat objects, clustering problem, help please
harmony seurat clustering scrna
updated by ATpoint ATpoint • written by rmorabar • rmorabar
0 votes
4 replies
1.6K views
Linkage disequilibrium estimation in unphased data?
correlation wes pearson ld kendall
written by Joel Wallenius Joel Wallenius
0 votes
6 replies
1.8K views
Why do Sox9 and Amh, which are Sertoli cell markers, show expression in the overall cell population?
analysis scrna-seq
written by Bio • Bio
0 votes
1 reply
848 views
ONT bulk PCR cDNA protocol
bulk ont pcr adapter umi
updated by GenoMax GenoMax • written by Sowmya • Sowmya
1 vote
7 replies
2.8K views
Fungal Annotation Comparison
annotation rnaseq fungus genome_assembly funannotate
updated by SanjidaR_NCBI • SanjidaR_NCBI • written by SomeOne • SomeOne
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