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0 votes
3 replies
987 views
VCF Header malformation
update vcf dictionary mismache header
updated by Jeremy Leipzig Jeremy Leipzig • written by Mahdi&Christ • Mahdi&Christ
0 votes
0 replies
1.2K views
News: Unlock the Power of Python for Biological Research: PYBD01
python
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
6 replies
1.8K views
STAR alignment to small fasta file failing
seq star alignment rna
written by campbio • campbio
0 votes
0 replies
1.4K views
Job: Postdoctoral Researcher (DFG‑funded): AI & Ageing Biology
bioinformatics longevity aging ai open-source
written by Anton • Anton
0 votes
3 replies
1.6K views
ONT Methylation calling
modifications nanopore ont epigenetic sequencing
updated by colindaven colindaven • written by Franci • Franci
0 votes
3 replies
1.6K views
picard MarkDuplicates READ_PAIRS_EXAMINED much lower than the number of read pairs successfully mapped by STAR
star removal rna-seq picard duplicate
updated by GenoMax GenoMax • written by maria • maria
1 vote
6 replies
4.3K views
Which threshold to be put in the MAPQ when doing mpileup of BCF tools on a STAR-generated BAM file ?
rnaseq star
updated by Titus Titus • written by mohsamir2016 • mohsamir2016
1 vote
1 reply
943 views
Mendelian Randomization, Liftover
mendelian-randomization liftover genetics
updated by gianmarcoabbadessa • gianmarcoabbadessa • written by lag • lag
0 votes
4 replies
1.7K views
Identifying primers in rna-seq data
cutadapt transcriptomics fastqc rna-seq primers
updated by ATpoint ATpoint • written by mtsrn • mtsrn
0 votes
6 replies
1.4K views
Plant transcriptome analysis and annotation
plants srna-seq adnnotation analysis expression
written by martta95 • martta95
0 votes
1 reply
860 views
Is Dorado, nanopolish, and xpore compatible with each other?
nanopolish ont dorado samtools xpore
updated by GenoMax GenoMax • written by ward.alafef • ward.alafef
0 votes
2 replies
1.2K views
Average Nucleotide Identity for bins
ani bin data shotgun
written by shevch2009 • shevch2009
0 votes
0 replies
1.2K views
News: Introduction to Python for Biologists (IPYB01)
python
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
3 votes
0 replies
814 views
Tool: CATS: reference-free and reference-based transcriptome assembly quality assessment
tool rna-seq transcriptomics transcriptome
written by Kristian • Kristian
0 votes
1 reply
618 views
Systematic review and Metanalysis
metanalysis systematic-review
updated by Ram Ram • written by Sara • Sara
0 votes
0 replies
610 views
Novel Junctions from SJ.out.tab
junctions rstudio novel star
written by SpliceAndScript • SpliceAndScript
0 votes
0 replies
729 views
Getting wrong scissor results while integrating bulk and single cell data
bulk intrgration single scissor cell tnbc
written by TNF_alpha • TNF_alpha
4 votes
14 replies
68K views
Tools to view fastq file
fastq
updated by GenoMax GenoMax • written by Roden Luo • Roden Luo
0 votes
4 replies
1.5K views
how extract CpG methylation calls from nanopore long sequencing bam file ?
methylation
written by reziyamaimaiti0331 • reziyamaimaiti0331
0 votes
0 replies
1.1K views
News: Online Course: Phylogenomics – 1–5 December
phylogenomics divergencetimeestimation phylogeneticinference
written by Physalia-courses Physalia-courses
1 vote
5 replies
1.7K views
How do I generate synthetic 16S RNA gene sequences?
16s sequence rrna infernal augmentation data oversampling cmemit
updated by shelkmike shelkmike • written by Max Sikolenko • Max Sikolenko
0 votes
1 reply
1.1K views
Minimap2 Output
with singletons interleaved minimap2
updated by Istvan Albert Istvan Albert • written by Jon • Jon
0 votes
1 reply
781 views
Liftover from mm10 to CAST/PWK – Very Low Mapping Rate & Missing Chain File
liftover
updated by GenoMax GenoMax • written by daffodil • daffodil
1 vote
10 replies
2.4K views
Does edgeR supports random effects?
rnaseq voom randomeffects edger limma
written by 406339165 • 406339165
0 votes
3 replies
987 views
Intro + Question
internship contribution
updated by Pierre Lindenbaum Pierre Lindenbaum • written by akshitabadrinath • akshitabadrinath
1 vote
3 replies
1.2K views
New to Bioinformatics, Phage genome investigation
prostt5 genetics phages bacteriophage sphae
updated by Michael Dondrup Michael Dondrup • written by Hanhan2000 • Hanhan2000
0 votes
2 replies
836 views
Issues for Purchasing The Biostar Handbook – Professional Edition
biostar handbook
written by JB007 • JB007
0 votes
4 replies
1.6K views
STAR aligned BAM files
genome_aligned star bam files transcripts
updated by Ram Ram • written by rajdeepboral00 • rajdeepboral00
0 votes
0 replies
938 views
Statistical comparison of chr8 amplifications in matched primary vs metastatic WGS samples using log2 CN data
statistics copy-number cnvkit
updated by Ram Ram • written by Dalal • Dalal
0 votes
1 reply
737 views
undefined chro name in vcf header
unplacedcontigs header vcf randomcontigs
written by Mahdi&Christ • Mahdi&Christ
1 vote
2 replies
1.2K views
Fixing MGI Sequence Headers - FASTQ Format
fastq mgi
written by joe_genome • joe_genome
0 votes
1 reply
567 views
how extract CpG methylatiuon calls from nanopore long sequencing bam file ?
methylation
updated by Ram Ram • written by reziyamaimaiti0331 • reziyamaimaiti0331
0 votes
4 replies
2.5K views
Draw a genome map with CGView server?
assembly genome map cgview
updated by Max Sikolenko • Max Sikolenko • written by El Niño • El Niño
0 votes
1 reply
1.0K views
The branch point is not labelled as expected
monocle
updated by wschen97 • wschen97 • written by Lin • Lin
1 vote
11 replies
16K views
Significance of the term "tile" in sequencing?
genomics
updated by Christopher • Christopher • written by joe_genome • joe_genome
1 vote
2 replies
777 views
chromosome ideogram
chromosome
updated by cmdcolin cmdcolin • written by zhangmyharper • zhangmyharper
0 votes
2 replies
1.1K views
bin reassembly question
data metawrap assembly shotgun
updated by Mensur Dlakic Mensur Dlakic • written by shevch2009 • shevch2009
0 votes
5 replies
1.3K views
What is the best way to handle "?" in the 7th column (strand) of GTF files?
fasta star ensembl gtf refseq
updated by GenoMax GenoMax • written by ki • ki
0 votes
0 replies
993 views
News: Workshop: Virtual RNA-seq Analysis, July 29–31
rnaseq workshop uconn
written by zsc25001 • zsc25001
0 votes
2 replies
1.0K views
lifting over mitochondrial SNPs between reference genomes
bcftools liftover hg19 picard vcf
updated by Jeremy Leipzig Jeremy Leipzig • written by 112233 • 112233
0 votes
3 replies
1.3K views
Merging segment CNV files
cnv
updated by Ram Ram • written by avelarbio46 • avelarbio46
0 votes
1 reply
5.2K views
convert PLINK file to genepop
snp genome snp
updated by Noeliton • Noeliton • written by age00 • age00
1 vote
6 replies
1.5K views
How do I interpert PCA before differential expression analysis
eda deseq2 pca qc
updated by Mensur Dlakic Mensur Dlakic • written by gogeni5529 • gogeni5529
0 votes
6 replies
1.2K views
RRBS (Reduced Representation Bisulfite Sequencing)
trim rrbs galore
updated by dthorbur dthorbur • written by sk_24 • sk_24
0 votes
0 replies
947 views
News: Course - Population Genomics Using Ancient DNA Data - Online, September 22-26
populationgenomics adna
written by Physalia-courses Physalia-courses
0 votes
0 replies
713 views
Repeat expansion VCF from ONT RU field and displayRU differences with gnomAD STR dataset repeat units
vcf strs annotation
written by ieie • ieie
11 votes
11 replies
7.6K views
What Are Your Most-Used Public Data Repositories?
database
updated by ATpoint ATpoint • written by Sean Davis Sean Davis
1 vote
6 replies
3.2K views
Is there a database of bioinformatics tools & databases?
ebi entrez
updated by ehaag • ehaag • written by LauferVA LauferVA
2 votes
9 replies
3.5K views
how can I search for a new release data?
next-gen microarray rna-seq homology-modelling
updated by ehaag • ehaag • written by yoingchinchina • yoingchinchina
0 votes
3 replies
1.0K views
How to trace back found motifs from homer and fimo to bed file so that visualization in genome browser
motif
updated by GenoMax GenoMax • written by EdisonJ • EdisonJ
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