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0 votes
4 replies
11K views
RNA seq batch correction with technical replicates
batch-effect rna-seq technical-replicates
written by Li 0
1 vote
0 replies
8.3K views
Forum: A plot twist to DropletQC (scRNAseq Nuclear Fraction-based empty droplet filter)
scrnaseq dropletqc velocyto starsolo
written by hsuknowledge 1
0 votes
2 replies
15K views
Problem creating STRUCTURE inputs with PLINK
vcf population plink structure genetics
updated by katherinedrotos 0 • | written by Begonia_pavonina 22
0 votes
1 reply
11K views
Forum: Quick career guidance request - B.Tech final year
biology bioinformatics masters computational
updated by jared.andrews07 1.9K • | written by Ayushman 0
0 votes
2 replies
11K views
Confusion regarding genome coordinates in Genbank of TP53
isoform tp53 genbank
written by strontium 0
0 votes
0 replies
8.6K views
News: online course: Latent Class, Markov and Hidden Markov Models with Applications in R
markovmodels hiddenmarkavmodels latentclass r
written by Physalia-courses 281
0 votes
0 replies
8.7K views
News: online course: Graphs with R: ggplot
data-visualization ggplot2 r
updated by GenoMax 16K • | written by Transmitting Science communication 7
0 votes
0 replies
8.8K views
News: Online course: Bioinformatic tools for transcriptomic data analyses
training transcriptomics rna-seq course
updated by GenoMax 16K • | written by Transmitting Science communication 7
0 votes
0 replies
8.8K views
diff_robust is TRUE but passed_ss is FALSE?
daa ancombc-2
written by sumin 0
0 votes
2 replies
12K views
Asking for source of the figure
seeking
updated by kalavattam 85 • | written by 张炘荣 0
0 votes
3 replies
11K views
bamCoverage with DNAse-seq shift
bigwig dnase-seq visualization deeptools
updated by vivekbhr 70 • | written by JMR 16
1 vote
3 replies
14K views
GSEA vs GO enrichment
go kegg gsea
updated by ATpoint 9.1K • | written by HarperReed 1
0 votes
0 replies
8.6K views
Question about adaptive bootstrap and self-tuning MCMC as acceptable methodology for publication
bootstrap phylogenetics beast2 mega mcmc
updated by GenoMax 16K • | written by RCMC 1
0 votes
8 replies
14K views
Fungal Genome Assembly: In a messed up situation
illumina pacbio nanopore assembly hifi
written by SomeOne 33
4 votes
4 replies
10K views
Tool: Resource: A searchable library of 100,000+ scientific figures for visualization inspiration
visualization
updated by shelkmike 201 • | written by mert 4
0 votes
0 replies
9.5K views
Job: Assistant, Associate, or Full Project Scientist in Cell & Developmental Biology
biology ucsd cell
written by UCSDBioSci 3
0 votes
1 reply
9.9K views
vg gbwt missing sample and haplotype metadata when created using minigraph-cactus with vg construct
construct gbwt vg minigraph-cactus
updated by Jouni Sirén 85 • | written by cassiwatt 1
0 votes
1 reply
9.2K views
trouble: getting gene names from chromosome location using intersect function in bedtools
intersect chromosome location geneids bedtools
updated by GenoMax 16K • | written by Sky 1
1 vote
0 replies
9.5K views
Job: Resident Academic Full-Time Post in Bioinformatics (University of Malta)
bioinformatics tenure academia
written by jp 13
0 votes
6 replies
11K views
Human WGS analysis system requirements
human ngs wgs analysis server
updated by GenoMax 16K • | written by genomics_buddy 0
0 votes
7 replies
20K views
Help with Error in cellchat
cellchat
updated by Arup Ghosh 402 • | written by Chris 36
0 votes
1 reply
11K views
statistical analysis
scrna statistics
updated by ATpoint 9.1K • | written by archanaverma433 2
0 votes
0 replies
10K views
News: online course: Introduction to Python Programming for Biologists
python biopython coding
written by Physalia-courses 281
0 votes
1 reply
10K views
Can I use raw read counts from the GTEx data for cross-tissue comparison?
rnaseq gtex statistics normalization
updated by GenoMax 16K • | written by mukherjeeliana24 0
5 votes
2 replies
12K views
Forum: FDR correction can sometimes lie to you!
correction statistics fdr testing multiple
updated by LChart 518 • | written by Chakri 5
2 votes
9 replies
14K views
Running metaSPAdes with 71M paired-end reads: RAM and swap memory concerns
metaspades assembly metagenomics
written by sumah.1si21bt017 3
0 votes
1 reply
11K views
Mageck RuntimeWarning overflow encountered in multiply
crispr python mageckmle mageck linux
updated by ATpoint 9.1K • | written by liz.b 0
0 votes
5 replies
12K views
Phage whole genome sequence submission by Bankit
phage submission
updated by acvill 36 • | written by Parto 0
0 votes
1 reply
11K views
How to determine the relative abundance
abundance relative genomics metagenomics
updated by sumah.1si21bt017 3 • | written by serene.s 0
0 votes
0 replies
10K views
Read- and Assembly-based taxonomic classification of mixed (Prokaryote + Eukaryote) metagenomes
shotgun taxonomy metagenomic
written by sumah.1si21bt017 3
0 votes
2 replies
11K views
Refcall in VCF
pass vcf phasing pipeline refcall
updated by prasundutta87 73 • | written by Mahdi&Christ 2
1 vote
8 replies
2.7K views
Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
analysis sequencing scrna seurat
updated by 1769mkc 127 • | written by Arindam 2
1 vote
7 replies
12K views
how to download gene annotation for NCBI GENE ID
r entrez ncbi
updated by josev.die 7 • | written by Bioinfonext 48
0 votes
0 replies
11K views
News: Genome Assembly using long-reads PacBio data
hic longreads genomeassembly pacbio
written by Physalia-courses 281
1 vote
2 replies
11K views
Taxonomic classification of shotgun metagenomic data of rhizospheric soil (bacteria + fungi)
shotgun classification taxonomic metagenomics
written by sumah.1si21bt017 3
0 votes
2 replies
10K views
I encountered an error while using R Diffbind for data analysis
diffbind r
written by Pallondyle 0
0 votes
1 reply
7.9K views
Single cell multiomics data i.e, sc(RNA+ATAC) seq data tar file
single omics cell multi
updated by ATpoint 9.1K • | written by Rupanjali 0
1 vote
4 replies
8.6K views
Rust-HTSlib Script Only Outputs BAM Header, Records Are Missing
rust bam rust_htslib
written by plusone 6
2 votes
2 replies
7.3K views
galaxy and RNA seq
seq rna
written by nmozdoori 2
0 votes
0 replies
6.5K views
DIABLO Multi-omics Integration
how results interpret diablo to
updated by GenoMax 16K • | written by Haya 0
0 votes
1 reply
7.9K views
Which metric is best to represent cell-level counts/features in Seurat: raw/log-normalized (nCount_RNA/nFeature_RNA) or SCTransform (nCount_SCT/nFeature_SCT)?
r visualization
updated by ATpoint 9.1K • | written by solo.albif 0
0 votes
2 replies
6.6K views
Job: Help with bioinformatics/genetics content of my CV
terminology cv
updated by Anchal 0 • | written by mairena.hirschberg 0
0 votes
3 replies
4.2K views
Where can I get Human microbiome dataset
microbiome human data
updated by Arup Ghosh 402 • | written by Emily 7
0 votes
15 replies
8.8K views
chimeraTE GTF format error
chimerate
updated by lieven.sterck 1.6K • | written by frarodmar17 4
0 votes
6 replies
3.6K views
Estimating copy number of heterologous genes from WGS data in Yarrowia lipolytica
wgs cnvs copy-number
updated by colindaven 844 • | written by Giorgia 1
0 votes
0 replies
3.2K views
News: online course (4th edition): Structural Variant Detection & Comparison
longreads nanopore pacbio structuralvariations
written by Physalia-courses 281
1 vote
0 replies
3.1K views
News: Cellosaurus release 53 + new SPARQL/RDF functionalities
database biocuration line knowledgebase cell
written by Amos Bairoch 14
0 votes
2 replies
3.2K views
Relative viral load estimation from NGS data – is it possible?
virology
updated by Mark 173 • | written by omicon 4
0 votes
1 reply
2.8K views
primer
primer
updated by GenoMax 16K • | written by elahe 0
0 votes
1 reply
3.5K views
Help installing and running PITA & PicTar for miRNA target prediction
microrna pita pictar
updated by Arup Ghosh 402 • | written by Andie 0
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