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0 votes
3 replies
3.5K views
Splitting VCF using phase information
phasing bcftools vcf
updated by cmdcolin 448 • | written by Kyra 0
0 votes
0 replies
2.9K views
Generating VCF file from Illumina MEGA array
strand vcf snp illumina microarray
written by 112233 2
0 votes
2 replies
2.8K views
High discrepancy between mutation frequency values
mf af gnomad tcga
written by Ana 1
2 votes
5 replies
3.4K views
How to troubleshoot strange hyperparameter trace from BSLMM (GEMMA)
gemma gwas bslmm
written by gina.maria 6
0 votes
1 reply
2.4K views
Mean count in DESeq
in deseq count mean
updated by GenoMax 16K • | written by prerna 0
1 vote
11 replies
4.8K views
is there publicly available tool for assembly of bionano data
om bionano assembly alignment
written by eebloom 11
0 votes
4 replies
9.7K views
Any bacterial databases that contain Gram staining information?
gram-positive gram-negative
updated by scyteklabo 0 • | written by archaeopteryx 0
0 votes
1 reply
2.8K views
detectRUNS R package error
mapping detectruns r roh homozygosity
updated by Miika 0 • | written by Roisin Marie 0
3 votes
1 reply
2.4K views
Visualisation of big insertions by using Illumina emedgene
emedgene
updated by GenoMax 16K • | written by Nina 3
0 votes
5 replies
2.8K views
Integrity of bam files
integrity ran-seq bam samtools
written by SHN 4
0 votes
0 replies
2.7K views
News: Course: RNA Sequencing Data with R/Bioconductor - online, 3–14 November
rnaseq differentialexpressionanalysis r bioconductor
written by Physalia-courses 281
0 votes
2 replies
3.5K views
Clumping- cannot mtfrm
clumping mr
updated by Onyeubani 9 • | written by sp 0
0 votes
2 replies
2.0K views
What is the best practice for scRNAseq analysis of multiple samples?
scrnaseq seurat single cell
written by Tundup 1
0 votes
0 replies
1.8K views
Forum: Trying to get into Drug Design & Molecular Docking
docking biochemistry ligands
updated by Ram 4.5K • | written by Shreyas 0
0 votes
3 replies
2.1K views
DESeq2 - Changing the order of counts / metadata
counts metadata deseq2
written by himanshu0102 1
3 votes
7 replies
4.3K views
Marker genes of hematopoietic stem cells for cluster annotation in single-cell analysis
single-cell cluster-annotation hsc marker-gene
updated by ATpoint 9.1K • | written by Ribo 8
0 votes
1 reply
1.9K views
Problem with Dfam-Database and the RepeatClassifier function of repeat modeler
dfam repeat-annotation te-database repeat-masking repeatmodeller
updated by GenoMax 16K • | written by WaspInSpace 0
0 votes
1 reply
1.0K views
Construction of a pangenome using multiple genome sequences and read data
vg
updated by colindaven 844 • | written by shcho 0
0 votes
1 reply
871 views
Leafcutter installation issue
leafcutter conda devtools
updated by michael.ante 408 • | written by jyotik 0
1 vote
0 replies
972 views
How to interpret and filter vg call output VCF
graph genotyping pangenome vg vcf
written by Tobias 4
0 votes
1 reply
995 views
Transcriptome splicing analysis tools
rna-sequencing splicing
updated by Ram 4.5K • | written by Morris_Chair 39
0 votes
2 replies
1.1K views
running featureCounts on multiple bam files
rnaseq r
updated by Ram 4.5K • | written by Mamta 0
0 votes
3 replies
1.2K views
Creating sliding window for methylation data
wgbs methylation
updated by Alex Reynolds 3.6K • | written by ty.fu 0
0 votes
0 replies
757 views
Running time of determining graph multiplicity in unicycler
hydrid genome unicycler assembly
written by 德水 0
0 votes
1 reply
1.4K views
How to get REF/ALT allele for a list of rsid and SNP notations
bed r variant vcf snp
updated by GenoMax 16K • | written by Meisam 25
0 votes
2 replies
1.2K views
CTCF binding sites
genome gencode annotations
written by pt.taklifi 7
0 votes
0 replies
1.1K views
News: Workshop: Virtual RNA-seq (de novo), August 19–21
workshop rnaseq uconn
written by zsc25001 1
0 votes
4 replies
1.3K views
Only 35 out of 800 genes in STAR reference assembly
rnaseq transcriptomics rna_seq star rna_sequencing
written by Jasper 0
0 votes
8 replies
2.5K views
Efficiently Converting CD-HIT-EST Clusters into .fasta Files
python msa clustering cd-hit
updated by Joe 2.2K • | written by mtsrn 0
0 votes
0 replies
839 views
Concatenation of adata and losing .var
single seq cell rna scanpy
written by bioinfo 19
0 votes
0 replies
924 views
Integrating and annotating multiple samples of single cell ATAC data
signac seurat scatac
written by AB 39
0 votes
2 replies
3.3K views
combine hifiasm and hifiasm-ont assemblies.
wgs ngs genomics sequencing
updated by shelkmike 201 • | written by Mark 6
0 votes
4 replies
1.6K views
Domains of protein
domains protein fasta
updated by roadmap34 0 • | written by brunofelicianodeomena 0
0 votes
1 reply
894 views
CYTOHUBA QUESTION (cluepedia)
cytoscape cluepedia network
updated by churas.camera 5 • | written by hwangseok1025 0
0 votes
3 replies
1.7K views
snpEff custom database not found
docker snpeff
updated by Arup Ghosh 402 • | written by sg197 4
0 votes
3 replies
1.2K views
How to determine phix read in undermined fastq files
demultiplexing
updated by GenoMax 16K • | written by 1769mkc 127
0 votes
2 replies
1.6K views
Job: Job search for Data Engineer role
engineer data
updated by Matthias Zepper 524 • | written by itparanoia 0
0 votes
6 replies
1.8K views
nanopore long sequencing DNA data data basecalling using EPI2ME ,NEXTFLOW and singualrity in cluster env have error : ERROR ~ Error executing process > 'getParams' Caused by: Process `getParams` te
basecalling
written by reziyamaimaiti0331 0
0 votes
4 replies
1.3K views
Nextflow STAR alignment process only aligning one fastq file when 6 are being passed in
nextflow rna-seq
written by smarcotte11 1
0 votes
0 replies
1.1K views
News: online course: Single-cell RNA-seq Analysis with R/Bioconductor
bioconductor single-cell-rnaseq
written by Physalia-courses 281
0 votes
0 replies
788 views
How to Generate PacBio HiFi Reads with Ground Truth Using PBSIM3?
pacbio pbsim pbsim3
written by DBPZ 0
0 votes
0 replies
1.2K views
News: Online course: Bioinformatic Analysis of Transposable Elements
transcriptomics transposableelements manualcuration genomeassembly
written by Physalia-courses 281
0 votes
4 replies
1.6K views
"No space left on device" error when making DIAMOND database, alternative download method?
database diamond
updated by Mensur Dlakic 3.0K • | written by pahurkar.arjun 0
0 votes
3 replies
1.3K views
Uninformative Cluster in scRNAseq
scrnaseq qc doublets
updated by Arup Ghosh 402 • | written by karlensberg 0
0 votes
2 replies
1.1K views
How to retrieve metadata for multiple genbank records
metadata genbank
written by SushiRoll 14
1 vote
5 replies
2.3K views
Best practice to merge per sample variant calls from personalized pangenomes
graph vcf haplotype-sampling vg personalized-pangenome
updated by GenoMax 16K • | written by Tobias 4
0 votes
2 replies
1.3K views
Why does the number of sequences increase after using Hi-C to mount chromosomes?
yahs hifiasm assembly hi-c gene
updated by shelkmike 201 • | written by xinguok794 1
0 votes
3 replies
1.1K views
Difficulties with assembly
megahit eukaryote assembly
updated by shelkmike 201 • | written by Mokammel Hossain 0
0 votes
2 replies
1.1K views
Seurat DimPlot generates a weird data frame together with the scatter plot
r seurat
written by solo.albif 0
1 vote
5 replies
5.8K views
How to download intronic positions from Ensembl
genome ensembl
updated by peterdion 0 • | written by Ati 5
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