Transcriptome splicing analysis tools

Dear all,

I have a question regarding RNA-seq data analysis. Do you know which tool(s) within the RStudio environment can be used to examine splicing differences across all transcripts not just for a single gene?

Thank you in advance for your help!

rna-sequencing splicing

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updated 12 months ago by Ram

• written 1.0 years ago by Morris_Chair

1 answer

Hi,

When I still worked with transcriptomics, I used DEXSeq to perform differential exon usage. You need aligned BAM files and the transcript annotation (see here for more details).

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written 12 months ago by michael.ante

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