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0 votes
3 replies
3.0K views
mummer4: how do I get the mapview executable?
mummer mapview
updated by GenoMax GenoMax • written by Tospohh • Tospohh
0 votes
4 replies
3.5K views
RTG (Real Time Genomics) docker image - Problem dealing with different VCFs
rtg vcf genomic cancer
written by stuckinanendlessfebruary • stuckinanendlessfebruary
0 votes
0 replies
2.7K views
News: online course: R/Bioconductor for Mass Spectrometry and Proteomics
r mass-spectrometry proteomics bioconductor
written by Physalia-courses Physalia-courses
0 votes
5 replies
3.0K views
How to obtain a refFlat file for the Rat
refflat_file rat
updated by GenoMax GenoMax • written by AIMAR • AIMAR
0 votes
0 replies
2.5K views
News: Course: Single-cell analysis with R/Bioconductor
singlecellexperiment singlecellworkflow singlecell singlecelldata
written by ludwig.geistlinger • ludwig.geistlinger
0 votes
4 replies
3.7K views
Is a direct comparison of the number of up- and down-regulated genes meaningful?
rna-seq
updated by kalavattam • kalavattam • written by biock • biock
0 votes
0 replies
2.4K views
How to convert demultiplexed Fastq to PRGs if Adaptor and Barcode information is not provided?
pipesnake paleomix uce fastq
written by s.pal2 • s.pal2
0 votes
2 replies
4.6K views
CUT&Tag signal normalization for generating bigWig files
cut-tag bigwig normalization
updated by ATpoint ATpoint • written by luminea • luminea
1 vote
2 replies
4.4K views
How to account for solvent controls in DESeq2 when comparing follicular vs luteal phase?
rnaseq replicates deseq2 edger
written by DareDevil DareDevil
0 votes
2 replies
1.9K views
How to detect divergent domains in AlphaFold models (CDD/InterProscan not working, PyMOL alignment)
alphafold structural-analysis domain-prediction pymol
written by LLG • LLG
0 votes
3 replies
1.8K views
combat_met error: mu_hat_mat[, batches_ind[[jj]]] : subscript out of bounds
combat_met epigenetics
updated by JmWangBio • JmWangBio • written by ramiro.barrantes • ramiro.barrantes
0 votes
3 replies
2.5K views
dual-RNA seq combined reference alignment and quantification.
exon dualrnaseq quantification annotation cds
updated by GenoMax GenoMax • written by ki • ki
0 votes
2 replies
5.5K views
Illumina and ONT reads comparison
assembly ont genome illumina hybrid-assembly
updated by colindaven colindaven • written by magatam • magatam
0 votes
2 replies
7.2K views
Motif analysis
jaspar motif meme homer analysis
updated by lieven.sterck lieven.sterck • written by sk_24 • sk_24
0 votes
2 replies
6.5K views
Dragon Motif Builder download link
motif dragon builder discovery
updated by colindaven colindaven • written by Amara • Amara
0 votes
0 replies
5.0K views
News: online course: Host and manage your R projects with Git & GitHub
git github r-projects
written by Transmitting Science communication • Transmitting Science communication
0 votes
4 replies
14K views
Asking for unmapped genes in RNA sequencing via Galaxy
galaxy
written by Atefeh • Atefeh
0 votes
2 replies
12K views
RNA-Seq - Strand-specific coverage for a paired library
bowtie2 bam rna-seq alignment
updated by swbarnes2 swbarnes2 • written by npb27 • npb27
0 votes
4 replies
11K views
RNA seq batch correction with technical replicates
batch-effect rna-seq technical-replicates
written by Li • Li
1 vote
0 replies
8.3K views
Forum: A plot twist to DropletQC (scRNAseq Nuclear Fraction-based empty droplet filter)
scrnaseq dropletqc velocyto starsolo
written by hsuknowledge • hsuknowledge
0 votes
2 replies
15K views
Problem creating STRUCTURE inputs with PLINK
vcf population plink structure genetics
updated by katherinedrotos • katherinedrotos • written by Begonia_pavonina • Begonia_pavonina
0 votes
1 reply
11K views
Forum: Quick career guidance request - B.Tech final year
biology bioinformatics masters computational
updated by jared.andrews07 jared.andrews07 • written by Ayushman • Ayushman
0 votes
2 replies
11K views
Confusion regarding genome coordinates in Genbank of TP53
isoform tp53 genbank
written by strontium • strontium
0 votes
0 replies
8.6K views
News: online course: Latent Class, Markov and Hidden Markov Models with Applications in R
markovmodels hiddenmarkavmodels latentclass r
written by Physalia-courses Physalia-courses
0 votes
0 replies
8.7K views
News: online course: Graphs with R: ggplot
data-visualization ggplot2 r
updated by GenoMax GenoMax • written by Transmitting Science communication • Transmitting Science communication
0 votes
0 replies
8.8K views
News: Online course: Bioinformatic tools for transcriptomic data analyses
training transcriptomics rna-seq course
updated by GenoMax GenoMax • written by Transmitting Science communication • Transmitting Science communication
0 votes
0 replies
8.8K views
diff_robust is TRUE but passed_ss is FALSE?
daa ancombc-2
written by sumin • sumin
0 votes
2 replies
12K views
Asking for source of the figure
seeking
updated by kalavattam • kalavattam • written by 张炘荣 • 张炘荣
0 votes
3 replies
11K views
bamCoverage with DNAse-seq shift
bigwig dnase-seq visualization deeptools
updated by vivekbhr vivekbhr • written by JMR JMR
1 vote
3 replies
14K views
GSEA vs GO enrichment
go kegg gsea
updated by ATpoint ATpoint • written by HarperReed • HarperReed
0 votes
0 replies
8.6K views
Question about adaptive bootstrap and self-tuning MCMC as acceptable methodology for publication
bootstrap phylogenetics beast2 mega mcmc
updated by GenoMax GenoMax • written by RCMC • RCMC
0 votes
8 replies
14K views
Fungal Genome Assembly: In a messed up situation
illumina pacbio nanopore assembly hifi
written by SomeOne • SomeOne
4 votes
4 replies
10.0K views
Tool: Resource: A searchable library of 100,000+ scientific figures for visualization inspiration
visualization
updated by shelkmike shelkmike • written by mert • mert
0 votes
0 replies
9.5K views
Job: Assistant, Associate, or Full Project Scientist in Cell & Developmental Biology
biology ucsd cell
written by UCSDBioSci • UCSDBioSci
0 votes
1 reply
9.8K views
vg gbwt missing sample and haplotype metadata when created using minigraph-cactus with vg construct
construct gbwt vg minigraph-cactus
updated by Jouni Sirén Jouni Sirén • written by cassiwatt • cassiwatt
0 votes
1 reply
9.2K views
trouble: getting gene names from chromosome location using intersect function in bedtools
intersect chromosome location geneids bedtools
updated by GenoMax GenoMax • written by Sky • Sky
1 vote
0 replies
9.5K views
Job: Resident Academic Full-Time Post in Bioinformatics (University of Malta)
bioinformatics tenure academia
written by jp jp
0 votes
6 replies
11K views
Human WGS analysis system requirements
human ngs wgs analysis server
updated by GenoMax GenoMax • written by genomics_buddy • genomics_buddy
0 votes
7 replies
20K views
Help with Error in cellchat
cellchat
updated by Arup Ghosh Arup Ghosh • written by Chris • Chris
0 votes
1 reply
11K views
statistical analysis
scrna statistics
updated by ATpoint ATpoint • written by archanaverma433 • archanaverma433
0 votes
0 replies
10K views
News: online course: Introduction to Python Programming for Biologists
python biopython coding
written by Physalia-courses Physalia-courses
0 votes
1 reply
10K views
Can I use raw read counts from the GTEx data for cross-tissue comparison?
rnaseq gtex statistics normalization
updated by GenoMax GenoMax • written by mukherjeeliana24 • mukherjeeliana24
5 votes
2 replies
12K views
Forum: FDR correction can sometimes lie to you!
correction statistics fdr testing multiple
updated by LChart LChart • written by Chakri • Chakri
2 votes
9 replies
14K views
Running metaSPAdes with 71M paired-end reads: RAM and swap memory concerns
metaspades assembly metagenomics
written by sumah.1si21bt017 • sumah.1si21bt017
0 votes
1 reply
11K views
Mageck RuntimeWarning overflow encountered in multiply
crispr python mageckmle mageck linux
updated by ATpoint ATpoint • written by liz.b • liz.b
0 votes
5 replies
12K views
Phage whole genome sequence submission by Bankit
phage submission
updated by acvill • acvill • written by Parto • Parto
0 votes
1 reply
11K views
How to determine the relative abundance
abundance relative genomics metagenomics
updated by sumah.1si21bt017 • sumah.1si21bt017 • written by serene.s • serene.s
0 votes
0 replies
10K views
Read- and Assembly-based taxonomic classification of mixed (Prokaryote + Eukaryote) metagenomes
shotgun taxonomy metagenomic
written by sumah.1si21bt017 • sumah.1si21bt017
0 votes
2 replies
11K views
Refcall in VCF
pass vcf phasing pipeline refcall
updated by prasundutta87 prasundutta87 • written by Mahdi&Christ • Mahdi&Christ
1 vote
8 replies
2.6K views
Huge discrepancy between Pipseeker & DRAGEN for Pipseq data
analysis sequencing scrna seurat
updated by 1769mkc 1769mkc • written by Arindam • Arindam
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