how to explain the sample size discrepancy in UCSC Xena
For HNSC, the sample size for Phenotype is 604, the sample size for survival is 603. The sample size for gene expression RNAseq is 566. Why aren't they the same number? Thanks.
Hello everyone, I recently downloaded the TCGA-BRCA gene expression and phenotype data from UCSC Xena (https://xenabrowser.net/datapages/?cohort=TCGA%20Breast%20Cancer%20(BRCA)&removeHub=https%3A%2F%2Fxena.treehouse.gi.ucsc.edu%3A443). While analyzing the data, I noticed there are 3 …
Dear Communities, The survival and correlation analyses were usually conducted based on Xena RSEM TPM/FPKM. But there is a thread (https://www.biostars.org/p/359648/#359677) indicating that these files …
Hello. In an RNAseq experiment I do not understand why the number of readings for each sample should be normalized. The differences between the number …
<p>I wonder what is the relationship between the depth and gene expression level in RNAseq?</p> <p>For example, let's say I have RNAseq with 10M reads …