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shl198
shl198
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440
Joined:
12.7 years ago
Last seen:
8.4 years ago
Location:
United States

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Latest posts by user
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Comment: C: Augustus install mac
written by shl198 shl198
0 votes
2 replies
2.8K views
Is checking clustering of technical replicates necessary for RNAseq?
rna-seq technical-replicates
updated by Ram Ram • written by shl198 shl198
0 votes
0 replies
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Comment: C: Why Does Rna-Seq Read Count Fit Poisson Distribution?
written by shl198 shl198
1 vote
2 replies
2.9K views
relationship between coverage and expression level in RNAseq
rna-seq depth expression experiment design
updated by Gary Gary • written by shl198 shl198
0 votes
1 reply
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Comment: C: How to get input for provean from vcf files annotated by snpeff?
written by shl198 shl198
2 votes
7 replies
5.4K views
How to get input for provean from vcf files annotated by snpeff?
snpeff vcf provean
updated by Ram Ram • written by shl198 shl198
0 votes
1 reply
2.2K views
detect SNPs using DNAseq fastq files which were used to assemble the genome
snp dna-seq assembly
updated by Ram Ram • written by shl198 shl198
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1 reply
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Comment: Comment: Why is pre formatted refseq database larger than nt database in blastdb?
updated by Ram Ram • written by shl198 shl198
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0 replies
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Comment: Comment: Bowtie2 treats reads as not mapping even if the reads have exact same sequences
updated by Ram Ram • written by shl198 shl198
0 votes
1 reply
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Comment: C: Bowtie2 treats reads as not mapping even if the reads have exact same sequences
written by shl198 shl198
2 votes
4 replies
4.1K views
Bowtie2 treats reads as not mapping even if the reads have exact same sequences with reference?
bowtie2 quality tophat rna-seq
updated by Ram Ram • written by shl198 shl198
5 votes
4 replies
9.1K views
Why is pre formatted refseq database larger than nt database in blastdb?
blast refseq nt
updated by Ram Ram • written by shl198 shl198
0 votes
0 replies
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Comment: C: Can bowtie2-build index for gzipped file?
written by shl198 shl198
1 vote
1 reply
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Comment: Comment: Can bowtie2-build index for gzipped file?
updated by Ram Ram • written by shl198 shl198
2 votes
5 replies
10K views
Can bowtie2-build index for gzipped file?
bowtie2 bowtie2-build gzip gunzip
updated by Ram Ram • written by shl198 shl198
0 votes
1 reply
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Comment: C: Why does trinity and cufflink use bowtie to align reads back to assembled reads?
updated by Ram Ram • written by shl198 shl198
0 votes
3 replies
5.6K views
Why does trinity and cufflink use bowtie to align reads back to assembled reads?
rna-seq trinity cufflink bowtie
written by shl198 shl198
1 vote
4 replies
25K views
How does sliding window work in Trimmomatic
trimmomatic illumina
updated by Ram Ram • written by shl198 shl198
7 votes
2 replies
15K views
Run Makeblastdb For Compressed File
blast+ makeblastdb
updated by Neilfws Neilfws • written by shl198 shl198
0 votes
1 reply
4.8K views
Align Paired End Reads Using Blast
blast paired-end ngs
updated by Istvan Albert Istvan Albert • written by shl198 shl198
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