This is a test version of Biostars. For the public version, visit https://www.biostars.org.
3 votes
7 replies
1.6K views
Can I integrate two scRNAseq datasets using DE genes?
seurat single cell integration
updated by antonioggsousa antonioggsousa • written by tais.bv • tais.bv
4 votes
5 replies
1.5K views
News: Malicious Rust libraries for bioinformatic software: sha-rst et al.
malware rust security
written by Matthias Zepper Matthias Zepper
1 vote
3 replies
1.8K views
RNA-seq: identifying pericentromeric region
genomics transcriptomics rna-seq assembly aligning
updated by William • William • written by Polly • Polly
0 votes
0 replies
247 views
MD of metalloprotein
gromacs md
written by Ria • Ria
0 votes
10 replies
2.4K views
How to handle a scattered cluster with mixed cell type markers in scRNA-seq subclustering analysis?
clustering scrna-seq findallmarkers
updated by Arup Ghosh Arup Ghosh • written by maplewj • maplewj
0 votes
5 replies
1.2K views
scDNAseq data
scdnaseq r variations cnv studio
updated by GenoMax GenoMax • written by baldinifrancesca92 • baldinifrancesca92
0 votes
4 replies
1.8K views
How do I choose the correct Trimmomatic parameters based on FastQC results?
trimmomatic quality-control fastqc rna-seq
updated by Istvan Albert Istvan Albert • written by abdulmajeedkhattak1 • abdulmajeedkhattak1
0 votes
4 replies
1.3K views
Can't seem to integrate similar datasets
seurat integration
written by tais.bv • tais.bv
0 votes
2 replies
1.1K views
Tool: Subseq - New Protein Design and Analysis Web UI + API service
bindcraft gromacs alphafold rfdiffusion api
written by Emin Bursa • Emin Bursa
0 votes
8 replies
3.2K views
MACS2 “0 reads have been read” error after alignmentSieve in ATAC-seq Nextflow pipeline (single-end)
deeptools nextflow atac-seq macs2
written by DdogBoss • DdogBoss
0 votes
0 replies
259 views
How retaining multi-mapping reads affects CHiCAGO interaction calls (PCHI-C data)
reads pchi-c multi-mapped chicago
written by Yukino • Yukino
0 votes
0 replies
377 views
News: From manual scripts to reproducible workflows: live online Nextflow course (Jan 19–21, 2026)
programming workflow workshop pipeline_analysis nextflow
written by ecSeq Bioinformatics • ecSeq Bioinformatics
0 votes
0 replies
414 views
How to run MD simulation for metalloprotein having zinc in GROMACS?
gromacs md
written by Ria • Ria
0 votes
1 reply
899 views
Forum: Seeking advice: How did CAT aspirants from science backgrounds decide if an MBA was right for them?
carreer advice
updated by Michael Dondrup Michael Dondrup • written by Prachi • Prachi
0 votes
4 replies
2.0K views
Can i use orthofinder for small protein datasets and not full proteome?
orthofinder effectors
updated by Emin Bursa • Emin Bursa • written by alexandrakortsi • alexandrakortsi
1 vote
1 reply
1.4K views
vg call AD frequencies for certain sites
vg
updated by tatianabellagio • tatianabellagio • written by Danny • Danny
1 vote
0 replies
1.0K views
News: New Comprehensive Tutorial Series: Co-expression Networks, Hi-C, DNA Methylation & WGS/WES Analysis
genome hi-c exome rna-seq
updated by GenoMax GenoMax • written by ngs101.com ngs101.com
0 votes
0 replies
462 views
News: Population Genomics course (online) - 16-20 March
gwas landscapegenomics introgression demographicmodels populationgenomics
written by Physalia-courses Physalia-courses
0 votes
0 replies
498 views
News: Introduction to Microbial Ecology Workshop (UConn CBC, Dec. 15 - 18)
microbiome microbial training ecology workshop
written by bioadam • bioadam
0 votes
2 replies
1.9K views
NovaSeq Xplus top unknown barcodes
fastq
updated by GenoMax GenoMax • written by 1769mkc 1769mkc
0 votes
6 replies
3.7K views
STAR genome index generation: NF-core vs manual parameters (seeking clarification)
transcriptome r coding
written by Amb@r85 • Amb@r85
0 votes
0 replies
597 views
Job: Job Opening - Post-Doctoral Research Fellow, Computational - Ghajar Lab
opening doctoral job post
written by Fred Hutch (Recruiting) Fred Hutch (Recruiting)
2 votes
2 replies
3.2K views
Job: SciLifeLab PULSE: Program for Future Leaders in Life Science (48 positions!)
postdoctoral entrepreneur sweden mentoring leadership
written by Matthias Zepper Matthias Zepper
0 votes
1 reply
1.3K views
FDR Corrected P-Values in FindAllMarkers() in Seurat
seurat single-cell
updated by Bastien Hervé Bastien Hervé • written by s • s
0 votes
0 replies
627 views
News: Workshop: Introduction to Microbial Ecology, December 15–18
microbialecology bioinformatics workshop uconn microbiome
written by zsc25001 • zsc25001
0 votes
0 replies
421 views
News: Upcoming Ensembl API and data access changes - new blog post available
ensembl
written by Ensembl Outreach • Ensembl Outreach
0 votes
0 replies
733 views
News: Spatial Transcriptomics course
spatialtranscriptomics singlecell bioconductor r
written by Physalia-courses Physalia-courses
0 votes
4 replies
2.3K views
Re-assembling old RNA-seq reads vs. using an existing transcriptome assembly
non-model-organism de-novo-assembly rna-seq
written by Mostafa • Mostafa
0 votes
4 replies
2.4K views
"sortmerna" quitting early--is this is a memory issue?
sortmerna rna-seq
updated by colindaven colindaven • written by Andrew • Andrew
0 votes
1 reply
985 views
Power calculations for differentially methylated DNA samples from sequencing
methylation
updated by colindaven colindaven • written by graeme.thorn graeme.thorn
0 votes
5 replies
3.2K views
Data integration single cell using Harmony
singlecell 10x harmony dataintegration
updated by yura.grabovska • yura.grabovska • written by _deb • _deb
0 votes
2 replies
1.6K views
mapping sequences on specific region of bacteria genome
genome fastq mapping
written by cabraham03 • cabraham03
0 votes
5 replies
7.6K views
Prokka output genes clusterization by function
data prokka shotgun
updated by Mensur Dlakic Mensur Dlakic • written by shevch2009 • shevch2009
0 votes
1 reply
1.2K views
Manual corrections for allele mismatches
mismatch harmonisation prs
updated by curious curious • written by Sakshi • Sakshi
0 votes
3 replies
1.7K views
Basics of WGCNA
wgcna
updated by pinheirofabiano • pinheirofabiano • written by brooke.bell1299 • brooke.bell1299
0 votes
2 replies
1.2K views
Repeated Coordinate Errors (>171823) in NC_007605.1 (EBV) GTF Conversion (LMP2A/2B Exons)
cellranger
updated by GenoMax GenoMax • written by halo22 halo22
0 votes
3 replies
2.0K views
combining RNA-seq replicates from low and deep-seq - is it useful?
biostats depth rna-seq
updated by GenoMax GenoMax • written by michaelp • michaelp
0 votes
8 replies
3.0K views
Issue while running Kenddata.
paired kenddata fastq
written by rana.elromh • rana.elromh
0 votes
3 replies
1.2K views
dismatch between pyOMADB and the website ?
oma pyomadb
updated by Adrian Altenhoff Adrian Altenhoff • written by CH • CH
0 votes
2 replies
1.5K views
Generating a Python parsable local db from dbSNP
python
written by gernophil • gernophil
0 votes
1 reply
1.2K views
Confusion about which docking pose to visualize vs. which pose to use for binding energy
zinc docking autodockzn
written by Ria • Ria
0 votes
2 replies
757 views
How to identify WES source tissue (blood vs. other)
wes
written by gernophil • gernophil
0 votes
4 replies
2.4K views
How to perform GO enrichment in non-model organisms?
go
updated by bioadam • bioadam • written by CaERu _no_ korokoro • CaERu _no_ korokoro
0 votes
0 replies
572 views
ARACNe-AP to viper aracne2regulon error
viper r aracne-ap aracne2regulon package
updated by GenoMax GenoMax • written by thasweer • thasweer
0 votes
0 replies
762 views
News: online course - Epigenomics Data Analysis
hic atacseq epigenomics chipseq multiomics
written by Physalia-courses Physalia-courses
0 votes
2 replies
2.1K views
How excactly is the Q30 is calculated?
q30 mgi
updated by colindaven colindaven • written by rodrigo • rodrigo
0 votes
1 reply
986 views
ClinVar - how can a missense coding variant in a gene also be a variant on a non coding antisense RNA gene?
clinvar transcripts variants
updated by dthorbur dthorbur • written by hello_bioinf • hello_bioinf
0 votes
1 reply
1.1K views
Question about QC and scrublet
scrublet
updated by Arup Ghosh Arup Ghosh • written by biotrekker • biotrekker
0 votes
2 replies
1.7K views
circos plot for genomic features
bed r plot track circos
written by Matteo Ungaro • Matteo Ungaro
0 votes
0 replies
678 views
News: Advanced Python for Biologists
python
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
Recent Votes
Recent Locations
Recent Replies