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0 votes
2 replies
704 views
degradome data adapter removal
degradome fastqc adapter
written by 1000-Logan 0
0 votes
5 replies
2.1K views
Sequencing run and batch variation
rna seq
updated by GenoMax 16K • | written by bioinfo 19
0 votes
1 reply
720 views
Why does including BQ<10 bases change Mutect2 calls in NovaSeq X Plus ctDNA data?
novaseq ctdna mutect2 variant-calling
updated by GenoMax 16K • | written by Anthony 0
0 votes
0 replies
354 views
CHEMBL single proteins and complexes indexing
chembl cdk1
written by jain72744 1
0 votes
5 replies
1.7K views
Braker Gene Annotations Post-processing
annotations braker3 fungi
updated by GenoMax 16K • | written by SomeOne 33
0 votes
16 replies
9.4K views
STAR genome index problem
rna-seq sequencing genome
updated by Ram 4.5K • | written by Ricky 6
0 votes
3 replies
1.9K views
Using RepeatModeller and RepeatMasker for Multiple Gastropod Genomes: Is a Single Repeat Library Sufficient?
genome-annotation repeatmodeller repeatmasker
updated by SomeOne 33 • | written by Rohan 4
0 votes
0 replies
541 views
News: Check our In-Person or Online NGS Data Analysis Courses for 2026
rnaseq dnaseq single-cell epigenomics nextflow
updated by Ram 4.5K • | written by ecSeq Bioinformatics 9
0 votes
2 replies
883 views
microRNA on the NCBI
ncbi microrna
updated by Corentin 66 • | written by m.esmaeilpour 1
0 votes
0 replies
410 views
Gene Significance and kME cutoffs for hub genes
hub-gene wgcna
written by Max Zheng 0
0 votes
0 replies
392 views
News: Conservation Genomics workshop - 7-10 April (online)
populationgenomics snps conservationgenomics inbreeding
written by Physalia-courses 281
3 votes
15 replies
4.9K views
Tool: Programming language trends in bioinformatics (2008–2025)
bioinformatics programming-languages
written by skyresearch 3
0 votes
0 replies
453 views
Seeking feedback from users of PGAP2
panaroo pan-genome roary prokaryotic
written by Jaykumar 5
1 vote
0 replies
786 views
Tool: FlashDeconv: Ultra-fast spatial transcriptomics deconvolution for Visium HD (1M spots in 3 minutes)
spatial-transcriptomics
written by Caffery 1
0 votes
0 replies
400 views
How to associate severity to sQTL
sqtl qtltools
written by Priyanka 1
0 votes
2 replies
1.1K views
Strategy for noisy ATAC-seq: Fragment size selection for pioneer factor DA analysis
deeptools deseq2 atac-seq bam
written by Abeer H 0
0 votes
4 replies
1.8K views
Tool: For anyone struggling with messy single-cell data, CyteType is worth a look
annotation scrna-seq
updated by theodore 14 • | written by sukhitha.basnayake 0
0 votes
0 replies
811 views
Job: Data Science Engineer at Berkeley Lab
computerscience bioinformatics dataengineer machinelearning datascience
written by BerkeleyLab 7
0 votes
3 replies
1.5K views
Seeking literature on mapping 27k/450k/EPIC methylation array probes to hg38 for epigenetic aging research
methylation hg38 epigenetics bioinformatics aging
updated by jared.andrews07 1.9K • | written by huangyiming 0
0 votes
0 replies
516 views
Job: Full Time Genetics Post-doctoral Associate, University of Minnesota
associate post-doctoral
written by Al 0
0 votes
1 reply
764 views
News: Virtual RAD-seq Analysis Workshop (UConn CBC, Dec. 16 -18)
workshop rad-seq training variants
written by bioadam 1
0 votes
1 reply
770 views
How can I obtain PAM50, IHC Receptor, and Expression TPM data from TCGA BRCA for RNA Seq Data
rna-seq breast cancer tcga
updated by i.sudbery 2.3K • | written by Parth 0
0 votes
2 replies
1.7K views
Issues with T2T in pigeon prepare from isoseq
long-read isoseq rna-seq
updated by Zikun-Yang 0 • | written by SethJ 0
0 votes
0 replies
422 views
News: Workshop: Virtual RAD-seq, January 13–15
uconn radseq bioinformatics genomics workshop
written by zsc25001 1
0 votes
2 replies
1.5K views
How to detect a duplication from IGV
igv coverage duplication mapping
written by pailloufat 0
1 vote
1 reply
1.5K views
I'm trying to understand common bottlenecks in going from gene lists (RNA-seq DEGs, GWAS hits) to biological insights.
workflow tool pathway-analysis literature enrichment
updated by i.sudbery 2.3K • | written by oluwafemi 1
0 votes
7 replies
2.3K views
Finding Transcription factors from a set of genes list
rna-seq transcription factor degs
updated by i.sudbery 2.3K • | written by rajdeepboral00 7
1 vote
0 replies
513 views
Tool: EDTA-Audit-Tool: A smart QC utility for checking bulk EDTA (TE annotation) results
transposable_element edta quality_control
written by Aa 1
0 votes
1 reply
787 views
umitools dedup and quality filtering
umitools filtering wgs quality deduplication
updated by i.sudbery 2.3K • | written by song 0
0 votes
1 reply
777 views
RNA-seq normalization for time-dependent analysis
rna-seq normalization
updated by i.sudbery 2.3K • | written by luca.sclisizzo 0
0 votes
0 replies
448 views
Calculating PRS in UKBiobank using PGSC_Calc
polygenic pgsc_calc genomic ukbiobank prs
updated by GenoMax 16K • | written by christiantd 0
1 vote
0 replies
434 views
Tool: New resource: curated plant (bell pepper, Capsicum annuum) RNASeq web portal
rnaseq
written by Bourumir 4
6 votes
6 replies
8.3K views
Open Reading Frame And Codons
orf sequence python codon
updated by CodonTable 0 • | written by Wilmer Garzon 6
1 vote
1 reply
862 views
Which method I should use to process cellranger data
seurat cellplex hashing cellranger
updated by Ram 4.5K • | written by zizigolu 438
0 votes
4 replies
970 views
GATK SelectVariants behavior with gvcfs
gatk selectvariants gvcfs
updated by Jeremy Leipzig 2.3K • | written by Gianfilippo 0
0 votes
4 replies
1.4K views
AGAT does not propagate DIAMOND functional annotations to BRAKER GFF3
diamond annotation braker genomics agat
updated by GenoMax 16K • | written by Kinoppy 0
0 votes
8 replies
2.0K views
ENCODE pipelines vs Nextflow/Snakemake: design choices and use cases
pipelines encode nextflow snakemake
written by DdogBoss 7
0 votes
0 replies
747 views
RSEM vs. SQUIRE for Transposable Element Accommodation
rna-seq
written by Etornam09 0
0 votes
2 replies
830 views
Understanding RNAseq normalization
rnaseq normalization edger tximport
updated by ATpoint 9.1K • | written by bioinfoguy2 1
0 votes
2 replies
1.0K views
How to identify ortholog sequences in non-model organisms not present on NCBI/UniProt?
ncbi orthologs
written by gikeda 0
0 votes
0 replies
761 views
News: Single-Cell RNA-Seq Data Analysis – in-person workshop (March 23–25, 2026, Berlin, Germany)
singlecell 10x seurat rnaseq cellranger
written by ecSeq Bioinformatics 9
0 votes
0 replies
633 views
News: Orchestrating Microbiome Analysis with Bioconductor - online course
r bioconductor microbiome metagenomics multiomics
written by Physalia-courses 281
0 votes
4 replies
963 views
Merging RNA modifications with transcript features.
features transcript modifications bedtools rna
written by Samali 0
0 votes
0 replies
352 views
Trying to download the Human CpG data from X-inactive and X-active chr
cpg x-chromosome methylation
written by AMARU 0
2 votes
0 replies
536 views
Tool: pylifemap: Mapping Data onto the Tree of Life
bioinformatics visualization metagenomics taxonomy
written by Damien 2
1 vote
0 replies
345 views
Tool: simd-accelerated DNA encoding library
dna simd encoding simdna
written by milesforjazz 8
0 votes
3 replies
1.3K views
SNPs calling using long-read whole-genome sequencing
long-reads snps pacbio
updated by GenoMax 16K • | written by YocelynGG 7
3 votes
0 replies
520 views
Tool: RAPTOR: RNA-seq pipeline optimizer with ML recommendations
rna-seq
written by ayehgeek 3
0 votes
4 replies
1.5K views
Using DecontX (ambient RNA correction) with doublet detection on scRNA-seq
detection doublet ambient rna scrna-seq
updated by Bastien Hervé 680 • | written by carolofharvest 6
0 votes
4 replies
970 views
Common motif sequence from HOMER, MEME
homer meme
updated by i.sudbery 2.3K • | written by Bio 1
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