This is a test version of Biostars. For the public version, visit https://www.biostars.org.
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567 views
News: Python for Biological Data Exploration & Visualisation
python
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
0 replies
661 views
News: Single-Cell RNA-Seq Analysis
single rna-seq cell
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
0 replies
588 views
News: Deep Learning Using Python
python learning deep
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
0 replies
613 views
News: Python for Data Science & Statistical Computing
python
updated by GenoMax GenoMax • written by oliverhooker oliverhooker
0 votes
2 replies
1.9K views
Chip-seq analysis Diffbind
chipseq diffbind
written by Irene • Irene
1 vote
3 replies
2.1K views
strong appearing variant not found by haplotypecaller in -ERC mode and deepvariant but with haplotypecaller in normal mode
deepvariant haplotypecaller
written by thomas.heigl.ibk • thomas.heigl.ibk
0 votes
0 replies
591 views
News: online course Introduction to Machine Learning with R (5th edition)
r ai omics genomics machinelearning
written by Physalia-courses Physalia-courses
0 votes
5 replies
3.6K views
low quality data or file name swapping -- cellranger arc errors when processing 10x scMultiomics data
scmultiomics encode scrna-seq scatac-seq cellranger-arc
updated by Arup Ghosh Arup Ghosh • written by Wu-Sheng Zhang • Wu-Sheng Zhang
1 vote
3 replies
3.8K views
The geo samples is not having sentrix id and sentrix position. But this information is needed for RnBeads workflow. How to proceed?
r next-gen sequencing
updated by yura.grabovska • yura.grabovska • written by preethibagopi28 • preethibagopi28
0 votes
2 replies
1.5K views
Finding Sentrix ID in HM450K arrays
methylarray
updated by yura.grabovska • yura.grabovska • written by Betul • Betul
0 votes
1 reply
698 views
How to improving 2-Nucleotide RNA-seq Mapping Accuracy
base-conversion
written by 2411110159 • 2411110159
32 votes
35 replies
18K views
Tutorial: How to Use Biostars, Part-I: Questions, Answers, Comments and Replies
documentation meta how-to
updated by 2411110159 • 2411110159 • written by Ram Ram
0 votes
8 replies
3.3K views
ID unifiying across different datasets
uniprot genesymbole id
updated by GenoMax GenoMax • written by zizigolu zizigolu
0 votes
6 replies
5.0K views
Visualize methylation status in Pacbio Hifi read
pacbio methylation
updated by cmdcolin cmdcolin • written by Cathy • Cathy
0 votes
2 replies
1.0K views
direct RNA long-reads alignment against reference genome
nanopore sequencing
written by frarodmar17 • frarodmar17
0 votes
0 replies
769 views
News: GWAS course - online, January 2026
r link imputation gwas
written by Physalia-courses Physalia-courses
0 votes
3 replies
2.1K views
Bumphunter function in minfi
minfi methylation dmr bumphunter r
written by eebloom • eebloom
0 votes
2 replies
1.4K views
snpEff: Unsupported structural variant types
vcf snpeff
written by shpak.max • shpak.max
0 votes
1 reply
1.5K views
How to pull specific comparisons for DEGs in DESeq2? Trying to understand setting contrasts after the model matrix and results lists.
deg rnaseq deseq2
updated by ATpoint ATpoint • written by atan • atan
0 votes
4 replies
2.2K views
Feature Counts vs Salmon quantification
featurecounts salmon rna-seq star
updated by GenoMax GenoMax • written by rajdeepboral00 • rajdeepboral00
1 vote
3 replies
3.0K views
DESeq2 Glimma2 visualisation error
deseq2 glimma2 plot r
updated by atakanekiz atakanekiz • written by Pahi • Pahi
0 votes
1 reply
874 views
Generate density plot for methylation data
methylation wgbs
updated by cmdcolin cmdcolin • written by ty.fu • ty.fu
0 votes
0 replies
660 views
News: RNA-Seq Analysis
rna-seq
updated by ATpoint ATpoint • written by oliverhooker oliverhooker
0 votes
0 replies
642 views
News: Introduction to Python for Ecologists and Evolutionary Biologists
python
updated by ATpoint ATpoint • written by oliverhooker oliverhooker
0 votes
5 replies
2.5K views
Cellranger error
10x multiplexing single cell
updated by GenoMax GenoMax • written by zizigolu zizigolu
0 votes
0 replies
603 views
Forum: computer science (undergrad) interested in starting a portfolio showcasing informatics skills
beginner
written by lesalgado • lesalgado
1 vote
6 replies
2.9K views
Comparison of different RNAseq data sets
batch-effect deg rnaseq
written by DrSmad • DrSmad
0 votes
0 replies
691 views
Low correlation from SparCC when using relative abundance tables.
network microbiome
written by yesquokkan • yesquokkan
0 votes
3 replies
2.6K views
how to do Manhatton plot for significant DNA methylation sites associations
r array epic statistics epigenetics
updated by Đorđe • Đorđe • written by Bioinfonext Bioinfonext
0 votes
2 replies
1.3K views
ONT MinION QC: Concatenate or Analyze Individually
ont fungus fastqc
written by Acervo • Acervo
0 votes
2 replies
1.5K views
Negative Results in McDonald–Kreitman MK test results
mktest
written by 18d10fee • 18d10fee
0 votes
2 replies
1.1K views
Importing Mothur into Phyloseqs cons.taxonomy error
mothur phyloseq 16s
updated by GenoMax GenoMax • written by jahlen.pinelo • jahlen.pinelo
0 votes
2 replies
1.2K views
Statistics
bh correction p-value significance scoary
updated by andres.firrincieli andres.firrincieli • written by erinda • erinda
1 vote
3 replies
2.0K views
Why did the QV value decrease significantly after using YAHS for HiC scaffolding?
merqury scaffolding assembly hic
updated by samuel.a.odonnell samuel.a.odonnell • written by xinguok794 • xinguok794
0 votes
4 replies
7.9K views
How to submit a bacterial (endosymbiont) ITS rDNA sequence to GenBank?
its genbank
updated by Kevin Blighe Kevin Blighe • written by dce1ee77 • dce1ee77
0 votes
3 replies
8.0K views
vg input and output files
vg
updated by Kevin Blighe Kevin Blighe • written by Michael • Michael
0 votes
4 replies
7.6K views
Issue with renaming genes in expression matrix for heatmap in R
hetmap
updated by Kevin Blighe Kevin Blighe • written by Kelly • Kelly
0 votes
3 replies
7.1K views
Genome assambly and annotation for isolated bacteria
reference dna wgs bacteria annotiton
updated by Kevin Blighe Kevin Blighe • written by m90 • m90
0 votes
4 replies
7.2K views
Midpoint rooting IQTREE newick file moves node support around
iqtree phylogeny ggtree phangorn ape
written by Luca Arbore • Luca Arbore
0 votes
2 replies
6.7K views
Reading AD and other genotype information from the VCF file
r vcf
updated by Kevin Blighe Kevin Blighe • written by ramiro.barrantes • ramiro.barrantes
0 votes
8 replies
12K views
Several questions for genereating human genome assembly
dorado genome assembly hifiasm
updated by colindaven colindaven • written by tungsega • tungsega
0 votes
3 replies
6.8K views
Tool 'sra_source' does not exist.
galaxy
updated by Kevin Blighe Kevin Blighe • written by Atefeh • Atefeh
0 votes
2 replies
5.9K views
Structural Clustering of Transmembrane Domains of Membrane Proteins
foldseek
updated by Kevin Blighe Kevin Blighe • written by William • William
0 votes
4 replies
6.2K views
Power analysis for miRNA sequecing
power mirna analysis
updated by Kevin Blighe Kevin Blighe • written by abedkurdi10 • abedkurdi10
0 votes
5 replies
7.8K views
single cell: differential expression between cluster subsets
scrna-seq statistics seurat
updated by Kevin Blighe Kevin Blighe • written by Lee • Lee
0 votes
3 replies
1.9K views
How to Calculate Average Coverage and Depth from ONT Sequencing
coverage average depth
updated by GenoMax GenoMax • written by dheeraj • dheeraj
0 votes
6 replies
2.4K views
Finding differences between individual patients in a time-series RNA-seq?
rnaseq deseq2 dge
written by txema.heredia • txema.heredia
2 votes
7 replies
8.8K views
How to Identify Conserved 21-mers Across TE Insertions in Drosophila?
consensussequence sequencealignment conservedmotifs rnai transposableelements
written by manikin_python9f • manikin_python9f
0 votes
9 replies
3.3K views
My PCA plot is weird: PC1 with 98.684% variance and PC2 with 0.582% variance
r pca rna-seq visualization
updated by Kevin Blighe Kevin Blighe • written by undergrad_student • undergrad_student
0 votes
8 replies
13K views
Low Mapping Rate with Kallisto on RNA-seq Data
rnaseq mapping ratio kallisto low
updated by Kevin Blighe Kevin Blighe • written by meetmet • meetmet
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