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0 votes
1 reply
1.2K views
GSEA to compare multiple experimental groups
gsea rna-seq
updated by Ram Ram • written by Steven • Steven
0 votes
2 replies
1.5K views
How to find GO function from GEO2R results
gene go-function geo geo2r
updated by geneontologyhelp • geneontologyhelp • written by guntul • guntul
1 vote
4 replies
1.8K views
Problem with Newick format - ggtree in R
r ggtree makenewick taxonomizr
written by Toupaie • Toupaie
0 votes
2 replies
854 views
Comparing TMM values between different RNA-seq experiments
rna-seq
written by Phiphi • Phiphi
0 votes
2 replies
1.2K views
Auxillary file
igblast
updated by Jesse • Jesse • written by Bharti • Bharti
1 vote
7 replies
2.4K views
How does kallisto handle multi mapped reads?
kallisto
updated by dsull dsull • written by bioinfo • bioinfo
0 votes
3 replies
1.5K views
DE Analysis Between A Subset Seurat Object Versus Original Seurat Object
scrna-seq seurat
written by Zeddicus • Zeddicus
0 votes
5 replies
1.9K views
IGV signal visualization, low and high signals
atac-seq igv
updated by Istvan Albert Istvan Albert • written by Orange • Orange
0 votes
7 replies
2.0K views
Trying to extract .cram file read sequences into array
cram pysam reads samtools
written by sacryt • sacryt
0 votes
14 replies
4.9K views
jellyfish installed in conda, but 'command not found' when I try to run it
jellyfish conda
updated by Joe Joe • written by michael.flower.14 • michael.flower.14
0 votes
3 replies
1.6K views
KEGG and GO analysis with Daphnia magna Uniprot IDs
rna-seq r
updated by Penbiotox • Penbiotox • written by Hannes • Hannes
0 votes
1 reply
1.0K views
sinto tool
scatac-seq signac
updated by jared.andrews07 jared.andrews07 • written by Manhezz • Manhezz
0 votes
5 replies
1.6K views
Linking metadata in non-Pubmed Commons indexed journal articles to records housed by NCBI
ncbi entrez sra journal metadata
written by LauferVA LauferVA
0 votes
2 replies
1.3K views
Homer findGO.pl questions
atacseq
written by Ronin • Ronin
0 votes
3 replies
1.8K views
Increasing per base G content in QC sequencing files
fastqc gc-content qc novaseq
updated by GenoMax GenoMax • written by robertsr • robertsr
0 votes
2 replies
1.4K views
Run Cellranger-ATAC on CNGB fastq files
cellranger-atac cngb
written by TomCat • TomCat
0 votes
3 replies
1.8K views
Job: 1 Bioinformatician position in San Sebastian (Spain)
postdoc phd proteomics scrnaseq transcriptomics
written by ev97 • ev97
2 votes
4 replies
1.7K views
Allele-specific expression in interspecific hybrids
rna-seq allele-specific-expression interspecific-hybrids
written by Sandy • Sandy
0 votes
5 replies
2.4K views
How to identify biallelic mutations called using WES data?
mutect2 gatk wes mutation
written by tanbiswas6 • tanbiswas6
0 votes
3 replies
1.3K views
WGCNA from Salmon Output
wgcna salmon tpm rna-seq
updated by jv jv • written by Adrij Pawan • Adrij Pawan
0 votes
0 replies
887 views
Amplicon analysis from nanopore sequencing
asv ont amplicon
written by H.Hasani H.Hasani
0 votes
2 replies
1.2K views
Forum: Exploring Career Reentry: Challenges and opportunities for Women After Maternity and Childcare Breaks
maternity career-gap career-reentry
updated by ATpoint ATpoint • written by ashaneev07 • ashaneev07
0 votes
0 replies
1.0K views
News: Online course: Spatial Omics in R/Bioconductor
r spatial-omics bioconductor tidyverse transcriptomics
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
6 replies
3.6K views
PCoA in ggplot2 and Adonis results
r pcoa
written by rene.j.erhardt • rene.j.erhardt
0 votes
2 replies
1.1K views
Exception : [rapidjson internal assertion failure: IsObject()]
salmon
written by Andrea • Andrea
0 votes
10 replies
2.4K views
Message seen when performing alignment
bwa alignment
updated by GenoMax GenoMax • written by K • K
0 votes
2 replies
2.3K views
Problem with interpreting output from Monocle3 graph_test()
trajectory_analysis monocle3
updated by synat.keam • synat.keam • written by Angelina_G • Angelina_G
0 votes
3 replies
1.2K views
gene coordinates data base
coordinates simulation gwas sim1000 gene
written by Eliza • Eliza
0 votes
3 replies
1.3K views
transcriptomic data for molecular subtyping
molecular-subtyping
updated by mark.ziemann mark.ziemann • written by mavy • mavy
1 vote
1 reply
1.0K views
Aneuploidy analysis from WGS
aneuploidy cnv wgs
updated by mark.ziemann mark.ziemann • written by Thierry Waltrich • Thierry Waltrich
0 votes
0 replies
687 views
String version 11 directionality
ppi string direction
written by ysnuye • ysnuye
0 votes
2 replies
1.0K views
Sample clustering from 10X single cell
clustering
written by synat.keam • synat.keam
1 vote
3 replies
8.3K views
how to install conda bcftools +fill-tags plugin ?
bcftools
updated by Ram Ram • written by Daniel • Daniel
0 votes
2 replies
1.7K views
How to add motifs in cellranger-arc reference?
gtf scrnaseq fasta cellranger
updated by Ehsan • Ehsan • written by bioinfo • bioinfo
0 votes
1 reply
1.5K views
Gnomad MAF question
maf
updated by Ram Ram • written by a615ebfb • a615ebfb
0 votes
8 replies
2.1K views
Speeding up WGS analysis
wgs
updated by GenoMax GenoMax • written by Trivas • Trivas
1 vote
0 replies
1.3K views
Herald: The Biostar Herald for Tuesday, February 20, 2024
herald
written by Biostar Biostar
0 votes
6 replies
2.5K views
What is the expected number of common/mutual/shared SNVs between two, three, four... unrelated individuals?
snv genomics variation snp human
written by Joel Wallenius Joel Wallenius
0 votes
5 replies
1.9K views
How do I get utr transcript coordinates?
utr transcript
written by Salvatore • Salvatore
0 votes
0 replies
633 views
getDifferentialPeaksReplicates.pl Output on Up/Dn regulated in target
homer deseq2
updated by Ram Ram • written by yee • yee
0 votes
0 replies
841 views
Range for the score values for STRING PPI database
string ppi
updated by Ram Ram • written by ysnuye • ysnuye
0 votes
6 replies
2.0K views
how to get entrez IDs from wormbase gene IDs
wormbase
written by leranwangcs • leranwangcs
0 votes
3 replies
1.4K views
pseudobulk differential expression design matrix
pseudobulk single-cell scrna-seq
written by nhaus • nhaus
0 votes
4 replies
1.6K views
ENA fastq file shown as single-end but has 2 fastq files: X.fastq.gz and Y.fastq.gz
fastq single-end ena
written by Aaliya • Aaliya
0 votes
0 replies
442 views
How to retrieve information on isolation location from NCBI?
ncbi isolation-location
updated by Ram Ram • written by loy • loy
0 votes
0 replies
565 views
How to get a UTR_CDS_Intron_Upstream_Downstream.bed file input of swDMR
gtf swdmr bed
written by jfelix • jfelix
0 votes
11 replies
4.0K views
Locating IBD candidates with just VCF files
relatedness genotypes ibd haplotypes vcf
written by Joel Wallenius Joel Wallenius
0 votes
4 replies
1.3K views
Limma - normalizing gene expression data from multiple SRA experiments
edger limma rnaseq sra
written by peter.polacek • peter.polacek
0 votes
1 reply
646 views
Protein - small molecule analysis
protein small-molecule
updated by dthorbur dthorbur • written by roniozagam94 • roniozagam94
0 votes
0 replies
466 views
Help needed to prepare consensus including overhangs
alignment overhangs merging sequencing
written by Bikal • Bikal
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