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0 votes
1 reply
1.4K views
Visualizing module eigene relationships in cytoscape
network wgcna cytoscape
updated by Scooter 31 • | written by MARK 0
0 votes
2 replies
1.3K views
Alternative tool or website of PathogenFinder
wgs bacteria
updated by GenoMax 16K • | written by Pegasus 13
0 votes
2 replies
1.7K views
How I should set `STAR` parameters to keep all the intronic reads?
star mapping
updated by dsull 781 • | written by Dan 18
0 votes
1 reply
716 views
samsift can't find the AS tag to filter a bam file generated using bowtie2
samsift bowtie2
updated by Pierre Lindenbaum 17K • | written by michael.flower.14 21
0 votes
10 replies
7.7K views
PDB residue serial inconsistency and PDB id&UniProt ID mismatch
pdb uniprotid pdbid
updated by Wayne 208 • | written by Nafi 0
0 votes
4 replies
1.4K views
Dsuite Dinvestigate error but no indication as to the source
dsuite
written by Drew 1
0 votes
1 reply
2.0K views
getting error when transfer labels for my scRNAseq data using FindTransferAnchors
scrnaseq
written by Sara 28
0 votes
0 replies
731 views
Discrepancy in Number of SRA between NCBI Website and BigQuery service (SQL request)
ncbi sql bigquery sra
written by marie.harmel 1
0 votes
1 reply
981 views
Issue with Image Display and Saving on AgriGO v2 Platform
plants agrigo gene-ontology non-model
updated by Ram 4.5K • | written by Nelo 2
0 votes
5 replies
4.8K views
How to root this tree?
phylogeny tree root
updated by Michael Dondrup 5.6K • | written by Mirko 0
0 votes
7 replies
2.9K views
limma eBayes error in analysis of Illumina HumanHT-12 V4.0 expression beadchip data
r beadchip limma microarray illumina
updated by 1769mkc 127 • | written by accibio 2
0 votes
4 replies
1.9K views
igvShiny issues with loading local bams
r igv shiny
updated by Malcolm.Cook 149 • | written by genya35 5
0 votes
2 replies
1.3K views
Granges manipulation
granges
written by Bastien Hervé 680
1 vote
3 replies
1.6K views
Practical Haplotype Graph
methodid phg
updated by lcj34 42 • | written by yifangt86 6
0 votes
0 replies
596 views
Choosing TPM cutoff for PCR validation
pcr tpm
written by sleepystudent 0
0 votes
4 replies
3.4K views
Manhattan plot for TWAS results
twas gwas manhattan-plot
written by rheab1230 15
0 votes
3 replies
2.1K views
HLA genotyping of whole genome sequencing data
hla genotyping wgs
written by Biomed-jeh 8
0 votes
0 replies
688 views
Building Ensembl database for HMMER
hmmer
updated by Ram 4.5K • | written by J 0
0 votes
1 reply
1.3K views
Multiple replicates with one SoapDenovo-Trans run?
rna-seq soapdenovo-trans transcriptome
updated by nargisbashir10 0 • | written by nina.maryn 3
1 vote
1 reply
1.9K views
gene alignment (microsynteny)
alignment microsynteny
updated by cmdcolin 448 • | written by gubrins 35
0 votes
0 replies
818 views
Any tool that can give me a list of DNA/RNA aptamers against specific protein as the in vitro SELEX library to screen the sequences?
aptamer protein selex
written by J.F.Jiang 93
0 votes
2 replies
1.1K views
Deseq2 shows differential expression while TPM values are not significantly different
deseq2 tpm
updated by jv 187 • | written by Aiswarya 2
1 vote
1 reply
999 views
ATAC-seq downstream analysis
atac-seq diffbind
updated by ATpoint 9.1K • | written by maplewj 2
1 vote
7 replies
2.7K views
Selecting query format for repeated calls to NCBI's API
ncbi esummary elink api efetch
updated by GenoMax 16K • | written by LauferVA 497
0 votes
0 replies
667 views
Predictor of Activation Domains
protein domain
written by buhbs 3
0 votes
1 reply
842 views
Multi-level multi-class CNN
cancer cnn rstudio python
updated by Mensur Dlakic 3.0K • | written by jain72744 1
2 votes
7 replies
11K views
Convert FPKM to TPM in R
r tpm normalization meta-analysis
updated by Ram 4.5K • | written by AlexStar 22
0 votes
5 replies
7.7K views
Sbatch slurm job
cluster sbatch slurm
written by marco.barr 22
0 votes
1 reply
759 views
biological replicate in STAR command
rnaseq
updated by swbarnes2 1.5K • | written by Sara 28
0 votes
1 reply
952 views
About getorf result
getorf orf
updated by shelkmike 201 • | written by ZZOYEA 2
0 votes
1 reply
863 views
Merging snpEff file and extracting novel mutations
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updated by Pierre Lindenbaum 17K • | written by realtreeecat 0
0 votes
2 replies
2.0K views
how to remove FORMAT field in vcf field
genotypes vcf
written by Karibu 0
0 votes
0 replies
699 views
calculating genetic risk score using HLA DQ haplotypes
hla prs dq haplotypes
written by seta 191
1 vote
1 reply
1.6K views
How to manually sort the legend of gseaplot2 (enrichplot, clusterProfiler) result?
gseaplot2 enrichplot ggplot2 clusterprofiler
updated by fracarb8 176 • | written by fabian 1
0 votes
0 replies
662 views
How to do blastp for MCScanx if i have genomic protein and gff?
synteny mcscanx
written by bioinfo223 1
0 votes
3 replies
1.3K views
Spearman correlation for ATAC data
correlation spearman
updated by gglim 22 • | written by daffodil 1
0 votes
0 replies
785 views
News: Live online course Data Manipulation with R Tidyverse, 3 and 5 of April
r manipulation tidyverse data
written by Sole 0
0 votes
2 replies
866 views
BMI as a continuous variable is my outcome, which type data i should put to calculate
transcriptomics
written by jiefei 0
0 votes
0 replies
553 views
Missing NaNs in correlation matrix for fine-mapping
gwas finemapping plink
written by always_learning 116
0 votes
0 replies
447 views
RNA-seq power analysis
rna-seq
updated by Ram 4.5K • | written by fanx 8
0 votes
3 replies
1.6K views
IGV read color ,what is inferred insert size and expected insert size mean?
igv
updated by GenoMax 16K • | written by Tao 4
1 vote
4 replies
1.7K views
Correlation for ATAC-Seq and Chip-Seq
rna-seq chip-seq atac-seq
written by qudrat.nii 4
0 votes
2 replies
1.5K views
TCGA metadata intersection
r tcga genomicdatacommons tcgabiolinks
written by Darked89 469
0 votes
0 replies
1.3K views
Job: Postdoctoral Fellow / Staff Scientist - Genomic Data Modeling Lab
genomics machine-learning seattle
updated by Ram 4.5K • | written by pejman.m 0
0 votes
1 reply
746 views
FIMO keep all results
fimo
updated by Mensur Dlakic 3.0K • | written by mathalfilip 0
1 vote
2 replies
1.4K views
get flanking sequences of a SNP in a vcf
vcf sequences
updated by Pierre Lindenbaum 17K • | written by erl1977 6
4 votes
0 replies
1.2K views
Herald: The Biostar Herald for Monday, February 26, 2024
herald
written by Biostar 380
0 votes
3 replies
1.3K views
How do you install ExpansionHunterDenovo on a Mac?
expansionhunterdenovo
updated by Ram 4.5K • | written by michael.flower.14 21
0 votes
2 replies
2.0K views
PCA plot analysis
rna-seq
updated by jared.andrews07 1.9K • | written by Sanjukta 0
0 votes
2 replies
1.0K views
How to interpret blastn results output
blast
written by neha.jnu463 0
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