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genya35
genya35
Reputation:
50
Joined:
10.3 years ago
Last seen:
2.4 years ago
Location:
United States
Latest posts by user
0 votes
4 replies
1.9K views
igvShiny issues with loading local bams
r igv shiny
updated by Malcolm.Cook Malcolm.Cook • written by genya35 • genya35
0 votes
1 reply
1.1K views
convert unmapped bam to fastqs and preserve tag
gatk
updated by abedkurdi10 • abedkurdi10 • written by genya35 • genya35
0 votes
1 reply
0 views
Comment: Comment: Picard CalculateHsMetrics perTargetCoverage for Novaseq bams
written by genya35 • genya35
0 votes
3 replies
1.7K views
Picard CalculateHsMetrics perTargetCoverage for Novaseq bams
picard
updated by GenoMax GenoMax • written by genya35 • genya35
0 votes
0 replies
1.4K views
struct2geno error
analysis population r
written by genya35 • genya35
0 votes
0 replies
1.1K views
get % of >= Q30 Bases (PF) per index with InterOp
next-gen
written by genya35 • genya35
0 votes
0 replies
763 views
count reads with a combination of specific SNPs in bam
snp next-gen
written by genya35 • genya35
0 votes
1 reply
851 views
visualizing a break in specific gene in exome data
next-gen
written by genya35 • genya35
0 votes
2 replies
1.8K views
gene expression analysis: convert RPKM to TPM
rna-seq
updated by 27atcggcta27 27atcggcta27 • written by genya35 • genya35
0 votes
0 replies
931 views
calculating total yield for Illumina sequencing run
next-gen
written by genya35 • genya35
0 votes
0 replies
0 views
Comment: C: parsing run info data with Interop
written by genya35 • genya35
0 votes
0 replies
0 views
Comment: C: Parser for Illumina Novaseq metadata
written by genya35 • genya35
0 votes
2 replies
2.6K views
parsing run info data with Interop
next-gen
written by genya35 • genya35
0 votes
1 reply
0 views
Comment: A: caluculate q30 from bam file with samtools
written by genya35 • genya35
0 votes
4 replies
2.8K views
caluculate q30 from bam file with samtools
next-gen
written by genya35 • genya35
0 votes
0 replies
1.0K views
Migmap to output the entire queried sequence
ngs
written by genya35 • genya35
0 votes
0 replies
0 views
Comment: C: aligning with igblast
written by genya35 • genya35
0 votes
2 replies
1.5K views
aligning with igblast
alignment
written by genya35 • genya35
0 votes
1 reply
3.5K views
blastn output format with full subject's sequence
sequence
updated by h.mon h.mon • written by genya35 • genya35
0 votes
1 reply
0 views
Comment: C: how to identify degenerate primers in reads
written by genya35 • genya35
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