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1 vote
5 replies
1.9K views
API way to find "Original submitter" files in SRA?
fastq sra
written by predeus predeus
0 votes
0 replies
505 views
MultiGemini is not doing indel realignment, right?? Gemini does't work with single read?
multigemini
written by ManuelDB ManuelDB
0 votes
2 replies
1.1K views
How to visualize unique and overlapping genes in upSet R plot
r proteomics upsetr
written by S'bonelo Glen • S'bonelo Glen
0 votes
0 replies
428 views
Exomedepth doubt
exomedepth
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Smilesky • Smilesky
0 votes
2 replies
959 views
polyA anaysis in cDNA data using FLAMAnalysis
polyt polya nanopore cdna
written by bioinfo_ga • bioinfo_ga
1 vote
8 replies
2.6K views
TCGA Biospecimens Slides Extraction
tcga
updated by Zhenyu Zhang Zhenyu Zhang • written by jain72744 • jain72744
0 votes
16 replies
3.7K views
hisat2 location does not exist
hisat2
updated by Ram Ram • written by Eric • Eric
0 votes
2 replies
976 views
Subset overlapping regions to find the minimal number of non overlapping regions
overlap bedtools intersect
written by Geoffrey • Geoffrey
0 votes
1 reply
931 views
Bumpy qq-plot
gemma emmax lmm gwas qqplot
updated by dthorbur dthorbur • written by Luqman • Luqman
0 votes
2 replies
3.2K views
ROSE Algorithm for Ranking Super Enhancers
chip-seq
updated by Ram Ram • written by mropri mropri
0 votes
7 replies
3.3K views
Forum: Tower Server configuration for NGS data analysis
ngs
updated by emma.a • emma.a • written by harasharan • harasharan
0 votes
1 reply
949 views
Job: FT Tenured Faculty Position at Washington University School of Medicine in St. Louis
neurogenomics fulltime missouri tenured faculty
updated by Ram Ram • written by Christi • Christi
0 votes
7 replies
2.0K views
How to turn a column into a character string (to execute filterbyname.sh of the BBTools suite)
bbtools filterbyname.sh bash
updated by Ram Ram • written by ella • ella
0 votes
1 reply
3.2K views
T2T chm13 fasta and annotation files
ngs t2t-chm13 reference-genome
updated by Darked89 Darked89 • written by sarahmanderni sarahmanderni
0 votes
2 replies
1.3K views
Phylogeny from mixed GBS and WGS
vcf phylogeny gbs wgs tree
written by maxrwjones • maxrwjones
0 votes
2 replies
1.2K views
How can I create a sample characteristic/mutation plot in R?
r heatmap publication mutation
updated by Ram Ram • written by db4761 • db4761
0 votes
1 reply
810 views
Extract single chromosome reads from Bam file
bam reads extract samtools
updated by ATpoint ATpoint • written by marco.barr • marco.barr
1 vote
5 replies
1.6K views
Filter out miRNA from ncRNA dataset
bowtie bowtie2 mirna filtering ncrna
updated by ATpoint ATpoint • written by binaryCode • binaryCode
0 votes
1 reply
1.4K views
How to estimate -g genome-size for Flye for de novo genome or for --meta mode when using Metaflye?
assembly fasta genomics nanopore pacbio
updated by akshay • akshay • written by O.rka O.rka
0 votes
4 replies
1.6K views
Salmon index issue
salmon rnaseq
updated by Istvan Albert Istvan Albert • written by Andrea • Andrea
0 votes
3 replies
1.6K views
line 164: 15342 Segmentation fault (core dumped) ${cmd} ${options} - 0<&0
vcf2bed megarow bedops
updated by BioinfGuru BioinfGuru • written by Niharika • Niharika
0 votes
2 replies
844 views
BLAST Database error: No alias or index file found for protein database
protein blast
written by hrza_mar • hrza_mar
0 votes
4 replies
1.6K views
How to find what is the most significantly modulated gene in GEO2R analysis?
gene geo geo2r
written by guntul • guntul
0 votes
2 replies
1.5K views
Separating bam file based on directionality / samtools view -F/-f option(s) appears to not do anything
ubuntu linux samtools
updated by Ram Ram • written by Matthew • Matthew
0 votes
4 replies
2.0K views
how to extract variants from the vcf.gz files linked below?
vcftools bcf vcf bcftools
written by Mahad • Mahad
0 votes
0 replies
549 views
Circle plot multi_fasta circular sequences
circle-plot fasta
updated by Ram Ram • written by marco.barr • marco.barr
0 votes
0 replies
650 views
WebAUGUSTUS training support
webaugustus augustus
written by Kinoppy • Kinoppy
0 votes
0 replies
985 views
Tool: 16S Data Analysis in R: Comprehensive Phyloseq-based Microbiome Data Downstream Analysis & Visualization Workflow - From Feature Table to Figures in Minutes
phyloseq analysis 16s microbiome r
written by camillatafuro • camillatafuro
0 votes
4 replies
1.5K views
Differential expression at pathway level
gsva
updated by AquaDeath • AquaDeath • written by Chris • Chris
0 votes
5 replies
1.7K views
How to calculate insert size and Stdev of insert file for Configure file of MaSuRCA assembly ?
masurca insert-size assembly
updated by Ram Ram • written by Sony Nguyen • Sony Nguyen
0 votes
0 replies
536 views
News: Online course: Model-Based Demographic Inference from Population Genomics
demographic-inference population-genomics demographic-models
updated by Ram Ram • written by Physalia-courses Physalia-courses
0 votes
2 replies
2.0K views
Biopython reference SASA values for 20 amino acids?
pdb structure biopython sasa
written by Nick • Nick
0 votes
1 reply
1.4K views
How to assess performance of a GWAS analysis pipeline
benchmark hail gwas performance
updated by Ram Ram • written by lsy9 • lsy9
0 votes
2 replies
906 views
Traveler with Infernal mapping failed
r2dt
updated by anton.i.petrov • anton.i.petrov • written by Larissa • Larissa
1 vote
0 replies
910 views
Forum: list of bioinformatics tools in cancer genomics
mutations cna cancer genomics loh
updated by Pierre Lindenbaum Pierre Lindenbaum • written by Bogdan Bogdan
2 votes
10 replies
12K views
fastq compression tools of choice
fastq compression
updated by Xi • Xi • written by Richard Richard
0 votes
2 replies
1.4K views
model.matrix in EdgeR to account for batch effects with multiple samples
edger design batch
written by Ann • Ann
0 votes
1 reply
667 views
UMI and index sequence in RNA-seq data
rna-seq
updated by Chris Dean • Chris Dean • written by aminijavad4 • aminijavad4
0 votes
0 replies
579 views
Extracting mutation and Mutation spectrum
mutation-plot sars-cov-2
updated by Ram Ram • written by realtreeecat • realtreeecat
0 votes
0 replies
535 views
Prediction of the active site of a protein complex
ghecom active-site
updated by Ram Ram • written by Curious • Curious
0 votes
1 reply
692 views
Phylogenetic analysis of Nucleic Acid Sequence
phylogenetic-analysis
updated by Ram Ram • written by Winnifred • Winnifred
0 votes
1 reply
1.2K views
Database of gene names and synonyms across species
database genes
updated by noodle noodle • written by dolphin-sea • dolphin-sea
0 votes
3 replies
1.3K views
GWAS drug-genes
drug gwas genomics
updated by LauferVA LauferVA • written by aj123 aj123
0 votes
1 reply
932 views
extracting multiple sequence alignment from bigMaf
bigmaf
updated by gubrins gubrins • written by Zhang • Zhang
0 votes
2 replies
2.3K views
I keep getting error ( code 3) while doing fasterq-dump
fasterq-dump sra-toolkit fastq-dump
updated by Pierre Lindenbaum Pierre Lindenbaum • written by naveedhasan2000 • naveedhasan2000
0 votes
7 replies
2.2K views
Bioconductor packages
biocmanager bioconductor
updated by Michael Dondrup Michael Dondrup • written by mrashad mrashad
0 votes
0 replies
708 views
Enzyme in Pathview
r metabolomic kegg pathview
updated by Pierre Lindenbaum Pierre Lindenbaum • written by CECEL • CECEL
0 votes
0 replies
764 views
ROH with genome in scaffolds
roh scaffolds busco whole-genome
written by Kimbeer • Kimbeer
0 votes
2 replies
1.1K views
Converting SNP data table into .traw format or qtl (R) format
r snp traw qtl
written by iaagosch • iaagosch
0 votes
0 replies
666 views
Looking for free access medical related data bases
literature-search publication data-mining
updated by Ram Ram • written by damejiab • damejiab
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