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how to remove FORMAT field in vcf field

Hello everyone

I wish to remove genotypes, or FORMAT field, and individual sample ID columns, or names from the vcf file. It is possible to do it with bcftools. I tried to find a specific command for this task but failed. I would appreciate it if you could assist with which command I can use to remove individual sample ID, not variants ID, and FORMAT Field in vcf files.

Many thanks

genotypes vcf
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written by Karibu • Karibu

1 answer 

bcftools annotate -x 'FORMAT/ABCD' 

bcftools view --samples [^]LIST             Comma separated list of samples to include (or exclude with "^" prefix).
• 0 views • link
written by Pierre Lindenbaum Pierre Lindenbaum

Hi Pierre Lindenbaum. I appreciate your help. – the command you shared above worked.

I was able to remove that information.

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written by Karibu • Karibu

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