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0 votes
2 replies
1.7K views
Is therer any suggestions on mapping rate of WGBS data?
mapping read alignment wgbs
written by Zeng Jingyu 10
1 vote
2 replies
1.3K views
News: We created a Bioinformatics Competition for Spatial Transcriptomics: MICOS-EU
cell-clustering spatial-transcriptomics
updated by Weiwen 0 • | written by MICOS 1
0 votes
4 replies
1.4K views
Correlation Analysis
statistics methylation ngs expression
written by Researcher 3
0 votes
2 replies
819 views
Repeated testing/data mining in RNA Seq
repeated rna-seq mining testing data
written by robert.flynn.21 1
0 votes
1 reply
2.4K views
Tool: Converting Nebula Genomics Data to 23andMe Format
23andme nebula
updated by Michael Dondrup 5.6K • | written by Guillermo 0
0 votes
5 replies
2.2K views
Comparative Analysis of Algorithms for Implementing the FM-Index: Correctness, Complexity, and Use Cases
fmindex bwt
updated by Michael Dondrup 5.6K • | written by qwertyuiop26 0
0 votes
1 reply
1.1K views
What is the proper way to identify the cell types of scRNAseq cluster?
scrnaseq
updated by ATpoint 9.1K • | written by MAPK2 5
0 votes
2 replies
1.6K views
Job: Bioinformatics Analyst - Laboratory Medicine and Pathology
job
updated by Xiaofen 0 • | written by toddknutson 6
0 votes
1 reply
796 views
Seeking Guidance on Identifying Mutations in DARs from ATAC Data in Cancer Genomes
genomics cancer-research atac-seq
updated by Ram 4.5K • | written by David 0
0 votes
4 replies
2.0K views
Where to get the following bed file?
reference bed wes
updated by Ram 4.5K • | written by wyuan37 0
0 votes
0 replies
492 views
Get Paired TCRa/b from MIXCR
python r mixcr tcr_seq
written by Scott McKay 3
0 votes
0 replies
566 views
Cellphonedb results
cpdb visulization cellphonedb
written by piotto 2
1 vote
0 replies
926 views
Job: Post-doctoral Position in Alzheimer’s Disease Genetics, ‘Omics, and Biomarkers
genomics alzheimer multiomics neuroimaging
written by belloy 1
0 votes
3 replies
2.1K views
How to compute TPM normalized values for TCGA miRNA data?
tcga normalization tpm mirna
updated by swbarnes2 1.5K • | written by Ngrin 0
0 votes
6 replies
2.2K views
anRichment is missing
wgcna anrichment
updated by GenoMax 16K • | written by michael.flower.14 21
0 votes
1 reply
827 views
Gene ontology and homologs
gene-ontology
updated by geneontologyhelp 57 • | written by beshka194 0
0 votes
2 replies
965 views
error in R code: Error in fit_avlr(...), : wn incorrectly formatted
r
updated by zx8754 1.2K • | written by snajafy 0
0 votes
0 replies
514 views
Cox Model with interaction item interpretation
cox
written by Nona 9
0 votes
0 replies
658 views
how to downlad slices of CRAM fro ICGC ARGO
icgc samtools cram
written by Javier 0
0 votes
7 replies
2.1K views
Question regarding WGCNA
wgcna network-construction
written by deepak 0
2 votes
0 replies
11K views
Herald: The Biostar Herald for Monday, May 06, 2024
herald
written by Biostar 380
0 votes
1 reply
1.7K views
16S rRNA microbiome differential abundance analysis with DESeq2 finds same microbial Genus in both groups.
microbiome 16s deseq2
updated by andres.firrincieli 412 • | written by Antonio 0
0 votes
0 replies
867 views
Error while loading model of Spatial data deconvolution using cell2location
python cell2location
updated by Ram 4.5K • | written by sidrah.maryam 7
0 votes
0 replies
628 views
Normalizing AMR gene count data
abundance rgi
updated by Ram 4.5K • | written by arshad1292 11
1 vote
1 reply
938 views
Help with VG Toolkit: VCF Output is Empty
vg
updated by Jordan M Eizenga 78 • | written by sarumonsus 1
0 votes
0 replies
625 views
How to implement an IGV to streamlit app?
python streamlit igv
written by avigail.shnaider 0
0 votes
5 replies
1.5K views
install.packages("imudata") - package ‘imudata’ is not available for this version of R
r
updated by Ram 4.5K • | written by snajafy 0
0 votes
3 replies
1.5K views
Error in checkFullRank(modelMatrix) : the model matrix is not full rank, so the model cannot be fit as specified.
deseq2
written by mropri 17
0 votes
2 replies
1.7K views
STRING-DB API can't find my protein but I can find it when I go to the STRING-DB website directly
string-db protein string-db-api
written by brandon 1
0 votes
0 replies
541 views
Mitogenomes gap closure and making circular genome
gapclosure mitogenomes validation circulargenome
written by KHURRAM SHAHZAD 0
0 votes
6 replies
6.8K views
install package: package ‘gmwm’ is not available for this version of R
r
updated by Pine 2 • | written by snajafy 0
0 votes
0 replies
602 views
Looking for phytopathogenic, Nitrogen-Fixing, and Growth-Promoting databases for Metagenomic Analysis
bacteria metagenomics database
written by Christopher 1
1 vote
1 reply
1.3K views
LD-prune variants while maintaining a list of SNPs
snp vcf plink filtering independent
updated by zx8754 1.2K • | written by Jautis 58
1 vote
2 replies
1.6K views
Association study using SNP data
association allele parentage snp
written by drajangirija 1
0 votes
0 replies
539 views
News: Online course: Bioinformatic analysis of transposable elements
genomeassembly transcriptomics transposableelements manualcuration
written by Physalia-courses 281
0 votes
3 replies
2.1K views
Problem with Seurat package in PercentageFeatureSet function
cell single
updated by bk11 312 • | written by Yoosef 6
0 votes
4 replies
1.9K views
Design matrix Differential expression analysis
rna-seq differential-expression
updated by Gordon Smyth 916 • | written by SHN 4
0 votes
2 replies
1.2K views
GRCh38.gmap file
gnomix gmap
written by lorena9132 1
1 vote
3 replies
3.6K views
Issues with Mixture file when using CIBERSORTx
deconvolution cibersortx
updated by vjanve 0 • | written by mateomejias 0
0 votes
1 reply
849 views
creating batch colum for batch correction
batch-correction combat
written by Expert 1
0 votes
4 replies
1.4K views
Segmentation error while using a tool
smalt
updated by Mensur Dlakic 3.0K • | written by RT 0
0 votes
1 reply
1.1K views
Help with DGEList function
dgelist r
updated by marco.barr 22 • | written by Natali 0
0 votes
0 replies
592 views
Homer motif analysis
homer
written by daffodil 1
1 vote
2 replies
2.1K views
News: The GDC Legacy Archive is retiring soon.
genomic-data-commons tcga gdc
written by Zhenyu Zhang 130
2 votes
2 replies
3.6K views
Force PLINK2 to neglect chrX as the sex chromosome
plink2
written by 8armed 2
0 votes
5 replies
2.8K views
Easy way to find out which allele is minor allele from bed file?
plink
updated by chrchang523 1.1K • | written by curious 90
0 votes
1 reply
1.7K views
visualize GSEA
barplot rna-seq gsea enrichment
updated by Ram 4.5K • | written by Rob 18
0 votes
2 replies
1.3K views
fastq screen aligner no specified.
bwa bowtie2 fastqscreen
updated by GenoMax 16K • | written by Ximena 0
0 votes
1 reply
1.2K views
filtering before dada2
bbduk qiime2 dada2 metagenomic
updated by Ram 4.5K • | written by Valentina 0
0 votes
6 replies
1.9K views
Differential Expression Analysis using DESeq2 in R
deseq2 r
updated by swbarnes2 1.5K • | written by Erina 0
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