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0 votes
1 reply
647 views
Deseq2
deseq2
updated by Jack Tierney • Jack Tierney • written by Sudip • Sudip
0 votes
1 reply
1.5K views
Polishing genome assembly
polishing nanopore pacbio
updated by Michael Dondrup Michael Dondrup • written by Lissa Cruz Saavedra • Lissa Cruz Saavedra
0 votes
3 replies
1.6K views
Integrate transcriptomic data and proteomics data.
omics
updated by Lluís R. Lluís R. • written by 이민경[학생](대학원 융합의과학과) • 이민경[학생](대학원 융합의과학과)
0 votes
2 replies
813 views
MA plot of shrunken fold change
ma-plot deseq2
updated by ATpoint ATpoint • written by Sudip • Sudip
0 votes
2 replies
922 views
Need help for downloading arabdopsis thaliana reference genome fasta file and gtf file
arabidopsis-thaliana gtf reference-genome
updated by Ram Ram • written by Ravita • Ravita
0 votes
3 replies
1.2K views
Gene Specific coverage from WGS data
wgs sars-cov2
updated by Ram Ram • written by Adyasha • Adyasha
0 votes
0 replies
619 views
human gut metagenome taxonomy profile table and KO profile table from big cohort
metagenome gut human
written by fanglujing • fanglujing
0 votes
0 replies
547 views
Are some metagenomes too complex for MAGs?
metagenomics metagenome mags assembly
written by Jacob • Jacob
0 votes
3 replies
2.0K views
Why cd-hit-est not work when sequence identity threshold<0.95？
genome cluster sequence
updated by weidonglu • weidonglu • written by JZX • JZX
0 votes
4 replies
2.3K views
Perfom a Gene Ontology Analysis from GO terms txt file
rna-seq go
updated by Ram Ram • written by Hamtaro • Hamtaro
0 votes
1 reply
793 views
Differential Accessibility
diffbind
updated by Ram Ram • written by shlo12 • shlo12
0 votes
3 replies
1.7K views
Landmark gene selection in L1000.
l1000 landmark-gene cmap
updated by GenoMax GenoMax • written by kim • kim
0 votes
2 replies
1.3K views
Extract protein sequence
fasta alignment blast
written by anna • anna
0 votes
3 replies
1.5K views
Is it possible to bulk download files from GEO repository?
rna-seq galaxy tanscriptomics
updated by noodle noodle • written by WUSCHEL WUSCHEL
0 votes
1 reply
795 views
metagenomic virome quality assessment
viromics metagenomics
updated by Ram Ram • written by Petchimuthu • Petchimuthu
0 votes
7 replies
1.9K views
FastQC Quality per tile and per sequence behaving strange after using Cutadapt
fastqc cutadapt illumina tile paired-end
written by Sergio A.S. • Sergio A.S.
0 votes
0 replies
672 views
Using limma in methylation EM-seq?
em-seq methylation
written by Lluís R. Lluís R.
0 votes
7 replies
2.6K views
Very low RNA splicing rate for pulmonary AT2 cells
rna-velocity scvelo scrna-seq splicing
written by e.r.zakiev • e.r.zakiev
0 votes
0 replies
526 views
Synteny analysis
bacterial synteny genome
updated by GenoMax GenoMax • written by Namil • Namil
0 votes
4 replies
1.2K views
Genbank File Format
gbkformat
written by alenew.am • alenew.am
0 votes
5 replies
3.2K views
How should I make kallisto indexes?
kallisto
updated by dsull dsull • written by bioinfo • bioinfo
0 votes
0 replies
702 views
Assist me in determining whether the analysis process using the limma package has been executed correctly
limma arrayexpress differentialexpression geoquery
written by SSSJec • SSSJec
0 votes
3 replies
998 views
Software to separate reads from different individuals
software development nanopore
updated by GenoMax GenoMax • written by njornet • njornet
0 votes
2 replies
2.7K views
How to update R on ubuntu
installation update r apt-get
written by Bosberg • Bosberg
4 votes
0 replies
983 views
Herald: The Biostar Herald for Monday, April 29, 2024
herald
written by Biostar Biostar
0 votes
1 reply
640 views
Two references 1. genome 2. plasmid for bowtie2
wgs bacterialgenomics alignment
updated by GenoMax GenoMax • written by RT • RT
0 votes
1 reply
960 views
Using Delly/Pindel/breakdancer for Identifying Transgene Insertion Sites in Mouse Genome
breakdancer insertion pindel variation delly
updated by trausch trausch • written by zec018 • zec018
0 votes
0 replies
736 views
LEfSe
lefse
written by benkosta • benkosta
1 vote
1 reply
820 views
How should I handle read counts derived from SGSeq when I want to build DEXSeqDataSet object
dexseq dexseqdataset sgseq
updated by sanjana B M • sanjana B M • written by Sara • Sara
0 votes
4 replies
1.8K views
Limma Analysis Agilent Microarray Data (GPL1708)
microarray limma agilent
written by hagl • hagl
0 votes
7 replies
1.9K views
RNAseq one control two conditions, shared and exclusive genes
conditions rnaseq multiple rstudio
updated by Mohamed Abderrahmane • Mohamed Abderrahmane • written by matteo.levorato • matteo.levorato
0 votes
2 replies
1.2K views
Longitudinal analysis of subpopulations: which approach is better?
differential-expression deg model
written by Lluís R. Lluís R.
0 votes
2 replies
915 views
How to solve DESeq2 Error in checkFullRank(modelMatrix)?
rna-seq deseq2
written by DOBI • DOBI
0 votes
0 replies
567 views
Comparing peptide sequences with MS/MS peptide data using MaxQuant
transcriptomics mass-spectrometry proteins
updated by Ram Ram • written by atharvakarkare14 • atharvakarkare14
0 votes
16 replies
3.6K views
How many reads for WGS Sequencing?
bacterial-genomics wgs
written by RT • RT
0 votes
2 replies
894 views
What should I consider as FASTA for dataset?
pdb fasta
written by Nafi • Nafi
4 votes
24 replies
7.4K views
NGS forensics: how to know if data is fabricated
fastq star ngs illumina
updated by i.sudbery i.sudbery • written by noodle noodle
0 votes
0 replies
1.1K views
Differential accessibility using DiffBinf
diffbind
written by shlo12 • shlo12
0 votes
2 replies
1.5K views
Can I merge Hi-C fastq files from different lanes?
genomeassembly bwa-mem2 hi-c
updated by GenoMax GenoMax • written by Winter • Winter
1 vote
7 replies
4.2K views
Differential Expression using Isoseq-supplemented reference transcriptome
rna-seq salmon isoseq
updated by Gordon Smyth Gordon Smyth • written by Calum • Calum
0 votes
1 reply
871 views
Finding batch and outlayers
pca
updated by mbyvcm mbyvcm • written by Tigran • Tigran
0 votes
2 replies
1.1K views
PDB related issue
rcsb pdb
updated by noodle noodle • written by Nafi • Nafi
0 votes
0 replies
551 views
News: Online course: Genome Annotation
genome-assembly genome-annotation
written by Physalia-courses Physalia-courses
0 votes
8 replies
3.1K views
What does it mean single base resolution in sequencing?
snp sequencing
updated by LauferVA LauferVA • written by jinyu • jinyu
1 vote
9 replies
4.8K views
Cannot process all the reads in a fast5 file?
metagenome base-calling fastq nanopore
updated by Ram Ram • written by Gio • Gio
0 votes
5 replies
2.6K views
Fetch table from clinvar database according to a list of rsid
python clinvar perl
written by ashaneev07 • ashaneev07
0 votes
2 replies
1.4K views
Downloading full alignments from Pfam
pfam
written by bef1 • bef1
0 votes
1 reply
1.4K views
Can I run cellassign on samples independently if there is batch effect present?
rna-seq r cellassign batch-effect
updated by Francesco • Francesco • written by gt • gt
0 votes
2 replies
1.5K views
ChIP-seq datasets: input samples omitted?
chip-seq normalization ngs
updated by i.sudbery i.sudbery • written by RelativeOptics • RelativeOptics
0 votes
0 replies
483 views
adjusting for confounders in LMER in R
confounders lmer r
updated by dariober dariober • written by rene.j.erhardt • rene.j.erhardt
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