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0 votes
4 replies
4.0K views
Have you ever obtained user guide of ExomeCNV?
cnv
updated by lffu_0032 9 • | written by oghzzang 5
0 votes
1 reply
711 views
input file for alternative splicing in rmats in linux
rmats
updated by Ram 4.5K • | written by Lambodarswain316 1
0 votes
2 replies
1.3K views
Server or aws cloud- which one is better for gatk pipeline
aws server calling gatk cloud
updated by Michael Dondrup 5.6K • | written by ashaneev07 5
1 vote
2 replies
1.6K views
ComBat_Seq stuck adjusting the data
batch-effect rnaseq combat-seq
updated by theresia.celine 1 • | written by NorbertK 1
0 votes
3 replies
5.8K views
How to solve the error 'ERROR::MATE_NOT_FOUND:Found xxx unpaired mates' when run SamToFastq
samtofasq picard validatesamfile
updated by Pierre Lindenbaum 17K • | written by Lila M 130
0 votes
3 replies
2.1K views
Nextflow: how to get the process work dir, within the process
nextflow
updated by Pierre Lindenbaum 17K • | written by ScottDansk 3
1 vote
0 replies
954 views
What is Deepvariant default filtering values ?
vcf calling filter variant deepvariant
written by Shae 1
0 votes
1 reply
1.0K views
Enhanced Volcano-Cut off
foldchange enhancedvolcano
updated by marco.barr 22 • | written by odi 3
0 votes
6 replies
3.8K views
Copy number Variation analysis using conumee
r software error sequencing genome
updated by GenoMax 16K • | written by gs000095 1
0 votes
2 replies
2.9K views
Conda severely broken after attempting mamba install
biopython conda mamba pycosat
updated by Quentin 0 • | written by kacollier 3
2 votes
3 replies
4.2K views
Seurat CellCycleScoring – confused about the proper order of operations when using SCTransform
cellcyclescoring sctransform seurat
updated by Kimaya 0 • | written by GPM 2
0 votes
0 replies
514 views
Summary Statistics SNPs not found in Target data
snp plink prs
updated by Ram 4.5K • | written by curious_butterfly 0
0 votes
4 replies
2.3K views
Contig assembly task, errors
dna genetics contig assembly
updated by Ram 4.5K • | written by samRayne 2
0 votes
0 replies
1.1K views
Annotate VCF via VEP for gnomAD annotation considering FILTER column
vep vcf gnomad
written by asalimih 6
0 votes
9 replies
2.6K views
kinannote software installation problems
kinannote
updated by Emanoelle 0 • | written by Elizabeth 4
0 votes
2 replies
2.1K views
Obtaining Infinium Methylation450K manifest for hg38
tcga hg38 methylation illumina
updated by Zhenyu Zhang 130 • | written by elisheva 12
0 votes
0 replies
655 views
Pathway analysis of Bacteria from denovo genome assembly
kegg-kass wgs pathway denovo
updated by Ram 4.5K • | written by mathavanbioinfo 8
0 votes
1 reply
3.8K views
Seurat V5 integration
seurat integration
updated by Ram 4.5K • | written by starswillfade 1
0 votes
2 replies
1.3K views
Error in plotting PCA plot in seurat
pca single-cell seurat scrna rna
updated by Ram 4.5K • | written by Sumeet 0
0 votes
0 replies
683 views
News: Online course: Introduction to Deep Learning
python deep-learning convolutional-neural-network machine-learning
updated by Ram 4.5K • | written by Physalia-courses 281
2 votes
5 replies
5.2K views
How to compare compare two Sam files to check mapping
alignment
updated by DavidStreid 11 • | written by madhu.9124 6
0 votes
2 replies
969 views
How/where can I get fungal mitogenome data for analysis?
fungal mitogenome
updated by GenoMax 16K • | written by madders73 1
0 votes
2 replies
1.0K views
How can I analyze normalized expression data?
deseq2 rna-seq
written by mnx0723 0
0 votes
4 replies
6.3K views
FarmCPU - how to explain the reported 'effect'?
gwas
updated by chloek88 0 • | written by Philipp Bayer 888
1 vote
7 replies
2.2K views
RNA seq analysis
deseq rna-seq
written by Jacek 2
0 votes
3 replies
1.6K views
TFs and Gene databases
transcription-factor target regulatory-networks
updated by b.contreras.moreira 49 • | written by ijarne 3
0 votes
0 replies
353 views
Chance for trained without experience
bio
updated by ATpoint 9.1K • | written by shehab 0
0 votes
3 replies
3.7K views
How do I change the title font size in ViolinPlot (Seurat)
seurat violin-plot ggplot2 patchwork
updated by e.r.zakiev 26 • | written by Assa Yeroslaviz 197
0 votes
2 replies
1.0K views
Phasing a mixture of two individuals' DNA with long reads
long-reads phasing
written by njornet 2
0 votes
2 replies
1.0K views
Exploring Diet Effects in Single-Cell RNA Sequencing
batch_effect scrna seurat integration
updated by Adam 3 • | written by Darya 0
0 votes
5 replies
2.0K views
Percentage coverage of reference genome by de novo genome
samtools bwa alignment ddrad
updated by Joe 2.2K • | written by Lemonhope 1
0 votes
5 replies
1.3K views
A question about reference genome for creating the consensus sequence
fasta fa cram genome
written by me 0
0 votes
0 replies
521 views
Blog: Introduction to The Complete Sequence of a Human Genome
biotech
written by usa.cd.genomics 0
0 votes
0 replies
1.4K views
Blog: Overview of Nanopore Sequencing
biotech
written by usa.cd.genomics 0
0 votes
0 replies
421 views
meffil.snp.concordance
meffil methylation snp_concordance
written by kyj222637 1
0 votes
1 reply
934 views
PseudobulkExpression.Seurat error
seurat pseudo-bulk
updated by Bastien Hervé 680 • | written by sooni 2
0 votes
5 replies
1.6K views
HCL database download
hcl
updated by Ram 4.5K • | written by sooni 2
0 votes
1 reply
951 views
barcode of TCR-sequencing
barcode
updated by mizraelson 6 • | written by yueli7 25
0 votes
3 replies
1.2K views
STAR aligner error
rna-seq star slurm
updated by Ram 4.5K • | written by M. 4
0 votes
2 replies
911 views
Correlating Bulk Differential Expression with quantitative
differential-expression deseq2
written by Nicholas 0
0 votes
4 replies
3.6K views
Understanding STAR output (Aligned.out.sam file)
star paired-end read
written by heelpPlease 0
0 votes
9 replies
3.5K views
Applying the metacell2 algorithm using python
python single-cell scanpy metacell2
updated by Wayne 208 • | written by AlexStar 22
0 votes
0 replies
551 views
News: Online course. -Time series analysis and Forecasting in R
time-series forecasting r stastics
written by Physalia-courses 281
0 votes
2 replies
2.1K views
HLA-HD tool for genomic imputation
genomics imputation bash
updated by Javier 0 • | written by fra.r.silvestro 1
0 votes
1 reply
1.6K views
ERROR: Duplicate entry "..." in sam header; samtools view: failed to add PG line to the header
sort. samtools. bam. sam.
updated by GenoMax 16K • | written by Sony Nguyen 2
0 votes
5 replies
1.8K views
Error in dimnames(x) <- dn : length of 'dimnames' [2] not equal to array extent
egsea
written by Chris 36
0 votes
2 replies
1.2K views
Differentail gene expression results
differential expression gene rna-seq deseq2
updated by swbarnes2 1.5K • | written by ahmad.sajad4541 0
0 votes
12 replies
3.8K views
UMI-Tools knee-method has great influence on the results of white list
single-cell whitelist umi rna umi-tools
updated by i.sudbery 2.3K • | written by Assa Yeroslaviz 197
0 votes
1 reply
545 views
student
epitranscriptomics
updated by ATpoint 9.1K • | written by useriwa 0
0 votes
3 replies
1.1K views
trying to count a pattern in my fastq file using bbduk
java bbduk bbmap fastq
updated by GenoMax 16K • | written by Assa Yeroslaviz 197
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